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Similarity of RNA secondary structures

✍ Scribed by Chun Li; Ai-hua Wang; Lili Xing

Publisher
John Wiley and Sons
Year
2006
Tongue
English
Weight
170 KB
Volume
28
Category
Article
ISSN
0192-8651

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✦ Synopsis

Abstract

In this article, we propose a relatively similar measure to compare RNA secondary structures. We first transform an RNA secondary structure into a special sequence representation. Then, on the basis of symbolic sequence complexity, we obtain the relative distance of RNA secondary structures. The examination of similarities/dissimilarities of a set of RNA secondary structures at the 3′‐terminus of different viruses illustrates the utility of the approach. Β© 2006 Wiley Periodicals, Inc. J Comput Chem 28: 508–512, 2007

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