✦ LIBER ✦

Parameter optimization for the Gaussian model of protein folding

✍ Scribed by Albert Erkip; Burak Erman; Chaok Seok; Ken Dill

Book ID: 108366475
Publisher: Elsevier Science
Year: 2002
Tongue: English
Weight: 1005 KB
Volume: 43
Category: Article
ISSN: 0032-3861
DOI: 10.1016/s0032-3861(01)00421-9

No coin nor oath required. For personal study only.

📜 SIMILAR VOLUMES

Extremal Optimization for protein foldin

Extremal Optimization for protein folding simulations on the lattice

✍ Hengyun Lu; Genke Yang 📂 Article 📅 2009 🏛 Elsevier Science 🌐 English ⚖ 590 KB

This paper presents a novel guided search strategy Extremal Optimization (EO) with constrained structure for protein folding. In the proposed algorithm, evaluating the fitness of each monomer in an amino-acid sequence is introduced to guide the improvement of the conformation. In addition, a constra

Local interactions and the optimization

Local interactions and the optimization of protein folding

✍ Ross Doyle; Kim Simons; Hong Qian; David Baker 📂 Article 📅 1997 🏛 John Wiley and Sons 🌐 English ⚖ 162 KB 👁 2 views

The role of local interactions in protein folding has recently been the subject of some controversy. Here we investigate an extension of Zwanzig's simple and general model of folding in which local and nonlocal interactions are represented by functions of single and multiple conformational degrees o

On the optimal folding of protein molecu

On the optimal folding of protein molecules

✍ Namiot, V. A. ;Batyanovskii, A. V. ;Filatov, I. V. ;Tumanyan, V. G. ;Esipova, N. 📂 Article 📅 2011 🏛 Biophysical Society of Japan 🌐 English ⚖ 176 KB

Standard errors for the parameters of gr

Standard errors for the parameters of graphical Gaussian models

✍ Alerto Roverato; Joe Whittaker 📂 Article 📅 1996 🏛 Springer US 🌐 English ⚖ 498 KB

A heteropolymer model study for the mech

A heteropolymer model study for the mechanism of protein folding

✍ Masataka Fukugita; David Lancaster; Mark G. Mitchard 📂 Article 📅 1997 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 913 KB

## 4 It('[['r<)[){]l!fn ('r tnodel (d rundoml~.scll~in(eruc[itrgchuirrs /n [MOdimcn.sitms is .studicd Lt'i[h numericul ,sitnulu(ions {n order [C] ehicida(e th(~.ji]ldingmechanism oj protein. H),find (hat the model occasionally . SIMN{ .S,li~lding propen.si[~,depending on [he .wqacnce ()/" random nam

Dynamics of the cluster model of protein

Dynamics of the cluster model of protein folding

✍ Minoru I. Kanehisa; Tian Yow Tsong 📂 Article 📅 1979 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 785 KB

## Abstract The cluster model of protein folding [Kanehisa, M. I. & Tsong, T. Y. (1978) __J. Mol. Biol.__ **124**, 177–194] is further investigated for the thermodynamic and kinetic properties of protein folding–unfolding transitions. A cluster is a locally formed ordered region in the polypeptide