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β-Alanine containing cyclic peptides with turned structure: The “pseudo type II β-turn.” VI

✍ Scribed by Vincenzo Pavone; Angelina Lombardi; Michele Saviano; Flavia Nastri; Roberto Fattorusso; Ornella Maglio; Carla Isernia; Livio Paolillo; Carlo Pedone


Publisher
Wiley (John Wiley & Sons)
Year
1994
Tongue
English
Weight
862 KB
Volume
34
Category
Article
ISSN
0006-3525

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✦ Synopsis


Abstract

In the present paper we describe the synthesis, purification, single crystal x‐ray analysis, and nmr solution characterization, combined with restrained molecular dynamic simulations, of the cyclic hexapeptide cyclo‐(L‐Pro‐L‐Phe‐β‐Ala)~2~. The peptide was synthesized by classical solution methods and the cyclization of the free hexapeptide was accomplished in good yields in diluted methylene chloride solution using N,N‐dicyclohexyl‐carbodiimide. The compound crystallizes in the monoclinic space group P2~1~ from methanol‐dichloro‐methane solution. The two identical halves of the molecule adopt in the solid state two different conformations. One β‐Ala‐L‐Pro peptide bond is trans, while the second is cis. The molecule is present in dimethylsulfoxide d~6~ solutions as a mixture of conformational families. One of these corresponds to a C~2~ symmetrical molecule with both β‐Ala‐Pro cis peptide bonds, while the second major conformation is very similar to that observed in the solid state. All Pro‐Phe segments, both in the solid state and the symmetrical and unsym‐metrical solution conformations, display ϕ,ψ angles close to that of position i + 1 and i + 2 of type II β‐turns. In addition, the segments preceeded by a trans β‐Ala‐Pro peptide bond are characterized by a typical ii + 3 hydrogen bond, which is absent in the conformer containing a cis β‐Ala‐Pro peptide bond. The latter conformation corresponds to a new structural domain we define as the “pseudo type II β‐turn.” © 1994 John Wiley & Sons, Inc.


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Proline-containing β-turns in peptides a
✍ Samir K. Brahmachari; Rao S. Rapaka; Rajendra S. Bhatnagar; V. S. Ananthanarayan 📂 Article 📅 1982 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 928 KB

## Abstract Amino acids are known to differ in their individual preferences for each of the four positions of the β‐turn conformation formed by tetrapeptide segments. Proline and glycine show relatively high preferences for positions 2 and 3, respectively, of the β‐turn. Using tripeptides of the ty