Theoretical study of molecular dynamics in model base pairs
β Scribed by Abderrazzak Douhal; Victor Guallar; Miquel Moreno; Jose Maria Lluch
- Book ID
- 103036286
- Publisher
- Elsevier Science
- Year
- 1996
- Tongue
- English
- Weight
- 496 KB
- Volume
- 256
- Category
- Article
- ISSN
- 0009-2614
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β¦ Synopsis
Ab initio calculations (4-31G basis set at CIS and CIS-MP2 levels) were carried out to investigate the nature of the double proton-transfer process of the 7-azaindole base-pair in both S O and S t states. The result is in agreement with the stepwise mechanism recently observed for S~, and reveals a diffuse transition state for the reaction in S 0. The stepwise nature of the phototautomerization originates from a localized electronic excitation in one part of the pair. Compression of the internal hydrogen bonds is crucial for the occurrence of the reaction in both states.
Base-pair ( BP )
Tautomer ( T )
Scheme 1.
π SIMILAR VOLUMES
Single and multiple proton transfers betweeu the bases guanine and cytosine and between adenine and thymine are studied usiug the LCAO SCF all-electron PRDDO method. Single proton transfers are found to lead to singkweli potentials while double transfers are characterized by double-well potentials.
A theoretical model for studying RNA base pairing is presented, based on similarity measures of the bases and corresponding indexes. Similarity calculations are made by evaluating atomic importance in molecules, a method that uses an original method for the calculation of electronic energy. The appl