Computed tomography or CT is a non-destructive imaging technique that uses penetrating radiation (mostly X-rays) to visualize the internal structure of a sample. The best-known example is the medical CT scanner, which has become a standard diagnostic tool in medicine, providing detailed views of the body with spatial resolutions below 1 mm. In recent years another type of CT scanner has been developed for mostly industrial and scientific applications, namely micro-CT scanners. These reached spatial resolutions down to a few microns. During 2005 the Radiation Physics research group (Department of Subatomic and Radiation Physics) and the Sedimentary Geology and Engineering Geology research group (Department of Geology and Soil Science) of the Ghent University jointly developed a modular micro-CT setup. The two main goals were to achieve a spatial resolution below 1 mm and to have a very versatile tool providing high-quality images. The source is a dual-head X-ray tube with a transmission type head with a nominal focal spot size of 900 nm below 40 kV tube voltage for high-resolution applications and a directional high-power head (up to 160 kV, up to 150 W), which enables scanning of larger samples. A six-axis sample manipulator system was assembled. The crucial component in this is an ultra-high-precision air-bearing rotation stage to keep all motion errors during rotation well below 1 mm. Depending on the application we have the choice between a number of detectors, each with its own advantages in terms of size, pixel resolution and energy sensitivity.