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Structure and Dynamics of RNA

✍ Scribed by D. H. Turner, S. M. Freier, N. Sugimoto, D. R. Hickey (auth.), P. H. van Knippenberg, C. W. Hilbers (eds.)


Publisher
Springer US
Year
1986
Tongue
English
Leaves
334
Series
NATO ASI Series 110
Edition
1
Category
Library

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✦ Synopsis


This volume contains contributions from the speakers at the NATO Advanced Research Workshop on "3D 5tructure and Dynamics of RNA", which was held in Renesse, The Netherlands, 21 - 24 August, 1985. Two major developments have determined the progress of nucleic acid research during the last decade. First, manipulation of genetic material by recombinant DNA methodology has enabled detailed studies of the function of nucleic acids in vivo. 5econd, the use of powerful physical methods, such as X-ray diffraction and nuclear magnetic resonance spectroscopy, in the study of biomacromolecules has provided information regarding the structure and the dynamics of nucleic acids. Both developments were enabled by the advance of synthetic methods that allow preparation of nucleic acid molecules of required sequence and length. The basic understanding of nucleic acid function will ultimately depend on a close collaboration between molecular biologists and biophyΒ­ sicists. In the case of RNA, the ground rules for the formation of secondary structure have been derived from physical studies of oligoribonucleotides. Powerfull spectroscopic techniques have revealed more details of ~~A structure including novel conformations (e.g. left-handed Z-RNA). A wealth of information has been obtained by studying the relatively small transfer RNA molecules. A few of these RNAs have been crystallized, enabling determination of their three-dimensional structure. It has become apparent that "non-classical" basepairing between distal nucleotides gives rise to tertiary interactions, determining the overall shape of the molecule.

✦ Table of Contents


Front Matter....Pages i-ix
Improved Parameters for Prediction of RNA Secondary Structure and Insights into why RNA forms Double Helixes....Pages 1-13
Anomalous Conformations of RNA Constituents : 2D NMR and Calculational Studies....Pages 15-30
NMR Studies of Base-Pair Kinetics of Nucleic Acids....Pages 31-44
Picosecond Time Domain Spectroscopy of Structure and Dynamics in Nucleic Acids....Pages 45-54
Z-RNA: A Left-Handed Double Helix....Pages 55-68
A Better Way to Make RNA for Physical Studies....Pages 69-76
Mg 2+ β€” Inner Sphere Complexes at β€œEnds” and β€œBends” of Polynucleotides and their Potential Role as Long Range Inducers of Conformation Changes....Pages 77-85
Pseudoknots in RNA: A Novel Folding Principle....Pages 87-98
Proton NMR Studies of RNA’S and Related Enzymes Using Isotope Labels....Pages 99-112
GU Base Pairs and Variable Loop in Yeast tRNA Asp ....Pages 113-124
Correlation Between Crystal and Solution Structures in tRNA. Yeast tRNA Phe and tRNA Asp the Models for Free and Messenger RNA Bound tRNAs....Pages 125-136
The Solution Structures of RNA Fragments Determined by Nuclear Overhauser Enhancement Measurements....Pages 137-149
Molecular Dynamics Simulation of the Anticodon Arm of Phenylalanine Transfer RNA....Pages 151-159
Anticodon-Anticodon Interactions and tRNA Sequence Comparison: Approaches to Codon Recognition....Pages 161-174
Studies on 15 N Labelled 5S RNA: Assignments in the Helix V Region of 5S RNA, and in the 5S/L25 Complex....Pages 175-189
Equilibria in Ribosomal RNA Secondary Structure....Pages 191-204
A Comparative Analysis of Structural Dynamics in 5S rRNA....Pages 205-219
A Domain of 23S Ribosomal RNA in Search of a Function....Pages 221-237
The Three-Dimensional Organization of Escherichia Coli Ribosomal RNA....Pages 239-251
The Extremely Small Mitochondrial Ribosomal RNAs from Trypanosomes....Pages 253-264
Mutagenesis of Ribosomal RNA as a Method to Investigate Interactions Between rRNA, mRNA and tRNA....Pages 265-271
Ribosomal RNA at the Decoding Site of the tRNA-Ribosome Complex....Pages 273-287
Double Stranded RNA in the Decoding of the mRNA by the Bacterial Ribosome....Pages 289-301
Conformational Dynamics Involved in RNA Self-Splicing....Pages 303-308
RNA Catalyzed Lariat Formation from Yeast Mitochondrial Pre-Ribosomal RNA....Pages 309-314
Viroids: Structure Formation and Function....Pages 315-329
Back Matter....Pages 331-337

✦ Subjects


Vibration, Dynamical Systems, Control


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