Statistics of single-molecule measurements: Applications in flow-cytometry sizing of DNA fragments
✍ Scribed by Matthew M. Ferris; Robbert C. Habbersett; Murray Wolinsky; James H. Jett; Thomas M. Yoshida; Richard A. Keller
- Publisher
- John Wiley and Sons
- Year
- 2004
- Tongue
- English
- Weight
- 367 KB
- Volume
- 60A
- Category
- Article
- ISSN
- 0196-4763
No coin nor oath required. For personal study only.
✦ Synopsis
Abstract
Background
The measurement of physical properties from single molecules has been demonstrated. However, the majority of single‐molecule studies report values based on relatively large data sets (e.g., N > 50). While there are studies that report physical quantities based on small sample sets, there has not been a detailed statistical analysis relating sample size to the reliability of derived parameters.
Methods
Monte Carlo simulations and multinomial analysis, dependent on quantifiable experimental parameters, were used to determine the minimum number of single‐molecule measurements required to produce an accurate estimate of a population mean. Simulation results were applied to the fluorescence‐based sizing of DNA fragments by ultrasensitive flow cytometry (FCM).
Results
Our simulations show, for an analytical technique with a 10% CV, that the average of as few as five single‐molecule measurements would provide a mean value within one SD of the population mean. Additional simulations determined the number of measurements required to obtain the desired number of replicates for each subpopulation within a mixture. Application of these results to flow cytometry data for λ/__Hind__III and S. aureus Mu50/__Sma__I DNA digests produced accurate DNA fingerprints from as few as 98 single‐molecule measurements.
Conclusions
A surprisingly small number of single‐molecule measurements are required to obtain a mean measurement descriptive of a normally‐distributed parent population. © 2004 Wiley‐Liss, Inc.
📜 SIMILAR VOLUMES
Cell division cycle (cdc) mutants of Schizosaccharomyces pombe are arrested at specific points in the cell cycle when grown at restrictive temperature. Flow cytometry of such cells reveals an anomalous increase in the DNA fluorescence signal, which represents a problem in experiments designed to det
Accurate measurement of single DNA fragments by DNA fragment sizing flow cytometry (FSFC) depends upon precise, stoichiometric DNA staining by the intercalating dye molecules. In this study, we determined the binding characteristics of a commercially available 532 nm wavelength-excitable dye and use
Quite often the main objective in a study is to compare two treatments: experimental and control. When these treatments are applied to a set of experimental units, the outcomes can be of two types, qualitative and quantitative, leading to either proportions or means. Accordingly, effect sizes are al