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Statistics of single-molecule measurements: Applications in flow-cytometry sizing of DNA fragments

✍ Scribed by Matthew M. Ferris; Robbert C. Habbersett; Murray Wolinsky; James H. Jett; Thomas M. Yoshida; Richard A. Keller


Publisher
John Wiley and Sons
Year
2004
Tongue
English
Weight
367 KB
Volume
60A
Category
Article
ISSN
0196-4763

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✦ Synopsis


Abstract

Background

The measurement of physical properties from single molecules has been demonstrated. However, the majority of single‐molecule studies report values based on relatively large data sets (e.g., N > 50). While there are studies that report physical quantities based on small sample sets, there has not been a detailed statistical analysis relating sample size to the reliability of derived parameters.

Methods

Monte Carlo simulations and multinomial analysis, dependent on quantifiable experimental parameters, were used to determine the minimum number of single‐molecule measurements required to produce an accurate estimate of a population mean. Simulation results were applied to the fluorescence‐based sizing of DNA fragments by ultrasensitive flow cytometry (FCM).

Results

Our simulations show, for an analytical technique with a 10% CV, that the average of as few as five single‐molecule measurements would provide a mean value within one SD of the population mean. Additional simulations determined the number of measurements required to obtain the desired number of replicates for each subpopulation within a mixture. Application of these results to flow cytometry data for λ/__Hind__III and S. aureus Mu50/__Sma__I DNA digests produced accurate DNA fingerprints from as few as 98 single‐molecule measurements.

Conclusions

A surprisingly small number of single‐molecule measurements are required to obtain a mean measurement descriptive of a normally‐distributed parent population. © 2004 Wiley‐Liss, Inc.


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