Somatic hypermutation of VκJκ rearrangements: targeting of RGYW motifs on both DNA strands and preferential selection of mutated codons within RGYW motifs
✍ Scribed by Sandra J. Foster; Thomas Dörner; Peter E. Lipsky
- Publisher
- John Wiley and Sons
- Year
- 1999
- Tongue
- English
- Weight
- 150 KB
- Volume
- 29
- Category
- Article
- ISSN
- 0014-2980
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✦ Synopsis
Productive and nonproductive V O J O gene rearrangements from individual peripheral blood B cells were analyzed for the pattern and distribution of mutations. The eight RGYW motifs and their inverse repeats, WRCY, were present in germ-line V O genes significantly more often than anticipated by random chance (1.6-fold and 1.4-fold, respectively) and were also mutated in nonproductive rearrangements significantly more often than expected, with a frequency 1.96 fold greater than that of non-RGYW/WRCY motifs. As a result, 50 % of all mutations in nonproductive V O J O rearrangements occurred in RGYW/WRCY motifs. Each RGYW tetramer and its corresponding WRCY contained mutations at comparable frequencies. Furthermore, mutations of G and C were significantly more frequent in RGYW/WRCY but not in other tetranucleotides. Finally, mutations in codons contained within RGYW/ WRCY were significantly more frequent in complementarity-determining regions but not framework regions of productive compared to nonproductive rearrangements and were increased by a factor that was significantly greater than for mutations in other motifs. These results indicate that the mutational machinery targets the overrepresented RGYW motifs in V O genes on both DNA strands and that the resulting replacement mutations are preferentially selected into the productive repertoire.
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