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Rapid differentiation between Hantaan and Seoul viruses by polymerase chain reaction and restriction enzyme analysis

✍ Scribed by Dr. Eui Chong Kim; Ik Sang Kim; Yong Choi; Suhng Gwon Kim; Jung Sang Lee


Publisher
John Wiley and Sons
Year
1994
Tongue
English
Weight
398 KB
Volume
43
Category
Article
ISSN
0146-6615

No coin nor oath required. For personal study only.

✦ Synopsis


Abstract

The majority of causative strains of hemorrhagic fever with renal syndrome (HFRS) are known as Hantaan and Seoul viruses in Korea. The clinical manifestations may be indistinguishable between both viruses, although the clinical course of Hantaan virus infection is more severe than that of the Seoul virus. Therefore, the differentiation of Hantaan or Seoul virus may be important for predicting the prognosis.

The primers were selected from the published sequences of the S segments of Hantaan virus strain 76–118 and Seoul virus strain SR‐11, which made it possible to obtain the same size of 403 bp amplified product by reverse transcriptase polymerase chain reaction (RT‐PCR) and nested PCR from both viral strains. The differentiation of the amplified products was carried out by restriction enzyme digestion. With __Hin__dIII, the 403 bp amplified product from Hantaan virus strain 76–118 was cleaved into two segments of 175 bp and 228 bp. By contrast, the 403 bp product from Seoul virus strain SR‐11 was not cut by __Hin__dIII. With __Hin__fI, the 403 bp amplified product from Hantaan virus strain 76–118 was divided into two bands of 280 bp and 60 bp on the electrophoresis. In the case of the digestion of 403 bp PCR product from Seoul virus strain SR‐11 with __Hin__fI, more than four bands (155 bp, 115 bp, 60 bp, and 32/29 bp) were observed on the 2% agarose gel electrophoresis. This rapid technique may be useful for the differential diagnosis of Asian HFRS in Korea. Β© 1994 Wiley‐Liss, Inc.


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