On Secondary Structure Rearrangements and Equilibria of Small RNAs
✍ Scribed by Ronald Micura; Claudia Höbartner
- Publisher
- John Wiley and Sons
- Year
- 2003
- Tongue
- English
- Weight
- 258 KB
- Volume
- 4
- Category
- Article
- ISSN
- 1439-4227
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An algorithm is presented for generating rigorously all suboptimal secondary structures between the minimum free energy and an arbitrary upper limit. The algorithm is particularly fast in the vicinity of the minimum free energy. This enables the efficient approximation of statistical quantities, suc
## Abstract According to the three classifications of nucleotides, we introduce a sort of binary coding method of RNA secondary structures. On the basis of this representation, we can reduce a RNA secondary structure into three binary digit sequences. We also propose coding rules based on the exclu
## Abstract Based on the concepts of cell and system of graphical representation, a class of 2D graphical representations of RNA secondary structures are given in terms of classifications of bases of nucleic acids. The representations can completely avoid loss of information associated with crossin