As aromatic residues very often are part of the hydrophobic essential for an accurate and precise structure determination. core of proteins, the unambiguous assignment of the aromatic Therefore, methods for the unambiguous assignment of aroproton resonances is essential for an accurate and precise s
Novel Pulse Sequences for the Resonance Assignment of Aromatic Side Chains in13C-Labeled Proteins
✍ Scribed by Frank Löhr; Heinz Rüterjans
- Publisher
- Elsevier Science
- Year
- 1996
- Tongue
- English
- Weight
- 456 KB
- Volume
- 112
- Category
- Article
- ISSN
- 1064-1866
No coin nor oath required. For personal study only.
✦ Synopsis
Complete resonance assignments are mandatory for de-will refer to as (HB)CB(CG)CDHD. Finally, the assigned side-chain resonances are linked to the backbone by use of tailed NMR studies of protein structures in solution. In many proteins, aromatic residues are involved in the construction an (H)CCH-COSY spectrum, thus determining the position along the amino-acid sequence. The correlations provided of the hydrophobic core and thus a large number of relevant long-range NOE contacts can be identified. A wealth of by each of the experiments are summarized in Fig. 1. Including the 13 C g chemical shifts leads to an overdetermination triple-resonance methods have been developed which allow establishment of sequential connectivities via the scalar cou-of the connectivity between the aliphatic and aromatic nuclei which can prove useful in the case of overlapping 13 C b or pling network (1). In contrast, the assignment of aromatic 1 H and 13 C resonances usually relies on the detection of NOE 13 C d resonances. Also, knowledge of the characteristic 13 C g chemical shifts allows distinguishing amino-acid types be-effects between aromatic and aliphatic protons of the same residue, although the use of HMBC experiments at natural fore complete assignment of the aromatic spin systems.
The pulse sequences in Fig. 2 likewise are of the ''out-13 C abundance has also been reported for this purpose (2). Standard HCCH-COSY (3) and HCCH-TOCSY (4, 5) ex-and-back'' type. The HCBCG experiment is similar to ct-HCACO ( 10) , which has already been proposed for periments, however, are not designed for a transfer of magnetization between the b-and g-carbon spins of aromatic the correlation of 1 H b and 13 C g( aromatic ) resonances in a two-dimensional version ( 11 ) . However, employing an side chains. The NOE-based approach may lead to ambiguities concerning the positions of the 1 H nuclei both in the HMQC-rather than an INEPT-type transfer between the two 13 C species has the advantage of completely remov-ring system and in the amino-acid sequence. It has been demonstrated that intraresidual connectivities in aromatic ing the effect of the passive 1 J CaCb coupling ( 12 -14 ) .
The delays T and e should be tuned to maximize the amino acids can be obtained reliably in carbon-detected 13 C, 13 C double-quantum correlations (6, 7). More recently, ex-expression periments have been introduced which correlate the chemical shifts of b-carbons and of aromatic protons either in a multi-sin 2 ͫ pJ CbCgͩ T 2 0 2e ͪͬ cos(pJ CaCb T )exp ͫ 0 T T 2 ( 13 C b ) ͬ .
📜 SIMILAR VOLUMES
Two 3D experiments, (H)CCH 3 -TOCSY and H(C)CH 3 -TOCSY, are proposed for resonance assignment of methyl-containing amino acid side chains. After the initial proton-carbon INEPT step, during which either carbon or proton chemical shift labeling is achieved (t 1 ), the magnetization is spread along t
HCN, a new 3D NMR technique for stepwise coherence transfer rarely sufficient to establish the mechanism through which from 1 H to 13 C to 15 N and reverse through direct spin couplings it participates in the protein's function. The structure may 1 J CH and 1 J CN , is presented as a method for dete
The precision of a protein structure determined by NMR spectroscopy is strongly influenced by the number of longrange NOE interactions per residue. Aromatic and methylcontaining residues are frequently located in the hydrophobic interior of proteins and yield long-range NOE interactions. Methyl grou
In paramagnetic heme proteins, it is often problematic to make the reduced (usually diamagnetic) state lack isotropic shifts proton resonance assignments for heme substituents that do not and are therefore difficult to examine by NMR spectroscopy. have large isotropic shifts and consequently lie und