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Non-proline Cis peptide bonds in proteins

✍ Scribed by Andreas Jabs; Manfred S Weiss; Rolf Hilgenfeld

Book ID
115629052
Publisher
Elsevier Science
Year
1999
Tongue
English
Weight
359 KB
Volume
286
Category
Article
ISSN
0022-2836

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In the native state of proteins there is a marked tendency for an aromatic amino acid to precede a cis proline. There are also significant differences between the three aromatic amino acids with Tyr exhibiting a noticeably higher propensity than Phe or Trp to precede a cis proline residue. In order

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Based on the geometrical parameters around seventeen incorrectly assigned trans conformations of peptide bonds in protein structures and their correct cis counterparts, we have devised an algorithm that is capable of detecting these sites. The algorithm was optimized to reliably find all of the seve