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New algorithms and an in silico benchmark for computational enzyme design

✍ Scribed by Alexandre Zanghellini; Lin Jiang; Andrew M. Wollacott; Gong Cheng; Jens Meiler; Eric A. Althoff; Daniela Röthlisberger; David Baker

Book ID
111752801
Publisher
Cold Spring Harbor Laboratory Press
Year
2006
Tongue
English
Weight
497 KB
Volume
15
Category
Article
ISSN
0961-8368

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📜 SIMILAR VOLUMES

A matching algorithm for catalytic resid
A matching algorithm for catalytic residue site selection in computational enzyme design
✍ Yulin Lei; Wenjia Luo; Yushan Zhu 📂 Article 📅 2011 🏛 Cold Spring Harbor Laboratory Press 🌐 English ⚖ 430 KB

## Abstract A loop closure‐based sequential algorithm, PRODA\_MATCH, was developed to match catalytic residues onto a scaffold for enzyme design __in silico__. The computational complexity of this algorithm is polynomial with respect to the number of active sites, the number of catalytic residues,