𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Molecular dynamics simulation of GM1 gangliosides embedded in a phospholipid membrane

✍ Scribed by Marcello Sega; Pál Jedlovszky; Renzo Vallauri


Book ID
104059531
Publisher
Elsevier Science
Year
2006
Tongue
English
Weight
255 KB
Volume
129
Category
Article
ISSN
0167-7322

No coin nor oath required. For personal study only.

✦ Synopsis


Molecular dynamics simulation of the hydrated phospholipid membrane built up by the unsaturated dioleylphosphatidylcholine (DOPC) molecules, containing a GM1 ganglioside molecule in each of its two layers has been performed. The system can be regarded as a model of the infinitely dilute solution of gangliosides in a phospholipid membrane, and can serve as a reference system for future studies of mixed membranes of finite concentration.

It is found that the GM1 ganglioside molecule, the headgroup of which is bearing a negative charge can form charge pairs with the positively charged choline group of the zwitterionic head of the DOPC molecules. This charge pair can involve either 1 or 2 nearest neighbour DOPC molecules. The observed lifetime of such a charge pair is in the order of a few nanoseconds, whereas the lifetime of a bifurcated charge pairing formed with two DOPC molecules is considerably shorter, being in the order of a few hundred picoseconds. The dipole vector of the polar headgroup of the DOPC molecules charge paired to GM1, represented by the vector pointing from their P to N atom (PN vector) prefers to point straight to the centre of the negative charge located at the C atom of the negatively charged carboxylic (COO -) group of the GM1 molecule.


📜 SIMILAR VOLUMES


Parallel molecular dynamics simulation:
✍ Zhiwu Fang; A.D.J. Haymet; Wataru Shinoda; Susumu Okazaki 📂 Article 📅 1999 🏛 Elsevier Science 🌐 English ⚖ 892 KB

This paper describes a parallel algorithm for Molecular Dynamics simulation of a lipid membrane using the isothermalisobaric ensemble. A message-passing paradigm is adopted for interprocessor communications using PVM3 (Parallel Virtual Machine). A data decomposition technique is employed for the par

Molecular dynamics simulation of cellobi
✍ B.J. Hardy; A. Sarko 📂 Article 📅 1993 🏛 John Wiley and Sons 🌐 English ⚖ 953 KB

The conformational behavior of cellobiose was studied by molecular dynamics simulation in a periodic box of waters. Several different initial conformations were used and the results compared with equivalent vacuum simulations. The average positions and rms fluctuations within single torsional confor