𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Molecular dynamics simulation approach for the prediction of transmembrane helix–helix heterodimers assembly

✍ Scribed by Oumarou Samna Soumana; Norbert Garnier; Monique Genest


Publisher
Springer
Year
2007
Tongue
English
Weight
506 KB
Volume
36
Category
Article
ISSN
1432-1017

No coin nor oath required. For personal study only.


📜 SIMILAR VOLUMES


Molecular Dynamics Simulation of Membran
✍ Tap Ha Duong; Ernest L Mehler; Harel Weinstein 📂 Article 📅 1999 🏛 Elsevier Science 🌐 English ⚖ 577 KB

Three molecular dynamics (MD) simulations of 1.5-ns length were carried out on fully hydrated patches of dimyristoyl phosphatidylcholine (DMPC) bilayers in the liquid-crystalline phase. The simulations were performed using different ensembles and electrostatic conditions: a microcanonical ensemble o

Molecular dynamics simulations of helix
✍ Shen-Shu Sung; Xiong-Wu Wu 📂 Article 📅 1997 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 168 KB 👁 3 views

Molecular dynamics simulations were applied to helix folding of alanine-based synthetic peptides. A single alanine residue in the middle of the peptide was substituted with various nonpolar amino acids (leucine, isoleucine, valine, glycine, or proline) to study the effect of the substitution. Unlike

Use of molecular dynamics data in bioche
✍ Fernanda M. Mazzé; Carlos A. Fuzo; Léo Degrève; Pietro Ciancaglini 📂 Article 📅 2008 🏛 The American Society for Biochemistry and Molecula 🌐 English ⚖ 431 KB 👁 1 views

## Abstract The aim of this manuscript is to explain the application of an amphipathy scale obtained from molecular dynamics simulations and to demonstrate how it can be useful in the protein structure field. It is shown that this scale is easy to be used with the advantage of revealing domains of

Molecular dynamics simulation of the sta
✍ Aldert R. Van Buuren; Herman J. C. Berendsen 📂 Article 📅 1993 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 627 KB

## Abstract A molecular dynamics (MD) simulation was performed on the α‐helix H8‐HC5, the C‐terminal part of myoglobin (residue 132–153), under periodic boundary conditions in two different solutions, water and water with 30% (v/v) 2,2,2‐trifluoroethanol (TFE), at 300 K to investigate the stability

A sequence-based computational model for
✍ Chengqi Wang; Lili Xi; Shuyan Li; Huanxiang Liu; Xiaojun Yao 📂 Article 📅 2011 🏛 John Wiley and Sons 🌐 English ⚖ 816 KB

## Abstract Predicting the solvent accessible surface area (ASA) of transmembrane (TM) residues is of great importance for experimental researchers to elucidate diverse physiological processes. TM residues fall into two major structural classes (α‐helix membrane protein and β‐barrel membrane protei