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Modeling the Sequence Dependent Rigidity of DNA with a Molecular Dynamics Parameterized Rigid Base Model

✍ Scribed by Mitchell, Jonathan S.; Maddocks, John H.; Manning, Robert


Book ID
119210176
Publisher
Biophysical Society
Year
2012
Tongue
English
Weight
34 KB
Volume
102
Category
Article
ISSN
0006-3495

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Long time dynamics of a polymer with rig
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Simulation data from an off-lattice polymer model are compared with data from the Rouse model. The polymer model is built of sequentially connected rigid monomer units that represent the amide planes of a protein backbone. The time propagation of the dynamics of the polymer model is performed by a M