𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Genealogical process on a correlated fitness landscape

✍ Scribed by Wilke, Claus O. ;Campos, Paulo R. A. ;Fontanari, Jos� F.


Book ID
102333867
Publisher
John Wiley and Sons
Year
2002
Tongue
English
Weight
166 KB
Volume
294
Category
Article
ISSN
0022-104X

No coin nor oath required. For personal study only.

✦ Synopsis


Abstract

We study with extensive numerical simulation the genealogical process of 2__N__ haploid genetic sequences. The sequences are under selective pressure, and fitness values are assigned at random, but with a tunable degree of correlation to the fitness values of closely related sequences. The genealogies that we observe can be classified into three different categories, corresponding to different regimes of the mutation rate. At low mutation rates, the sequences remain localized around a small number of central sequences, which leads to trees with short pairwise distances and slow turnover of the most recent common ancestor of the population. At high mutation rates, we observe trees similar (but not identical) to those of neutral evolution. In this regime, the population drifts rapidly, and selection does not influence the distribution of fitness values in the population. The third regime, for intermediate mutation rates, is only found in strongly correlated landscapes. It resembles the one for high mutation rates in that the population drifts rapidly, but nevertheless selection still shapes the distribution of fitness values. J. Exp. Zool. (Mol. Dev. Evol.) 294:274–284, 2002. © 2002 Wiley‐Liss, Inc.


📜 SIMILAR VOLUMES


Error Thresholds on Correlated Fitness L
✍ Sebastian Bonhoeffer; Peter F. Stadler 📂 Article 📅 1993 🏛 Elsevier Science 🌐 English ⚖ 457 KB

The evolution of molecular quasispecies on two different complex fitness landscapes, the Sherrington Kirkpatrick spin glass and the Graph Bipartitioning landscape, is investigated in dependence on replication fidelity and population size. Three different regimes of replication fidelity are detected.

Population Evolution on a Multiplicative
✍ Glenn Woodcock; Paul G. Higgs 📂 Article 📅 1996 🏛 Elsevier Science 🌐 English ⚖ 489 KB

A theory for evolution of either gene sequences or molecular sequences must take into account that a population consists of a finite number of individuals with related sequences. Such a population will not behave in the deterministic way expected for an infinite population, nor will it behave as in

On the use of random walks to estimate c
✍ Garrison W. Greenwood; Xiaobo (Sharon) Hu 📂 Article 📅 1998 🏛 Elsevier Science 🌐 English ⚖ 400 KB

It is shown that fitness landscapes for constrained optimization problems are statistically anisotropic. Consequently, conducting a single, long random walk to estimate correlation in the landscape can produce incorrect results. We argue that more accurate estimates can be obtained by forming a comp