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FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment

โœ Scribed by Adrian Driga; Paul Lu; Jonathan Schaeffer; Duane Szafron; Kevin Charter; Ian Parsons


Publisher
Springer
Year
2006
Tongue
English
Weight
370 KB
Volume
45
Category
Article
ISSN
0178-4617

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โœ B. Morgenstern ๐Ÿ“‚ Article ๐Ÿ“… 2002 ๐Ÿ› Elsevier Science ๐ŸŒ English โš– 534 KB

In the segment-based approach to sequence alignment. nucleic acid, and protein sequence alignments are constructed from fragments, i.e., from pairs of ungapped segments of the input sequences. Given a set F of candidate fragments and a weighting function w : F + FL:, the score of an alignment is de