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A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences through Alignment

โœ Scribed by Jesper Jansson; See-Kiong Ng; Wing-Kin Sung; Hugo Willy


Publisher
Springer
Year
2006
Tongue
English
Weight
253 KB
Volume
46
Category
Article
ISSN
0178-4617

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โœ B. Morgenstern ๐Ÿ“‚ Article ๐Ÿ“… 2002 ๐Ÿ› Elsevier Science ๐ŸŒ English โš– 534 KB

In the segment-based approach to sequence alignment. nucleic acid, and protein sequence alignments are constructed from fragments, i.e., from pairs of ungapped segments of the input sequences. Given a set F of candidate fragments and a weighting function w : F + FL:, the score of an alignment is de