Prediction of transmembrane beta-strands in outer membrane proteins (OMP) is one of the important problems in computational chemistry and biology. In this work, we propose a method based on neural networks for identifying the membrane-spanning beta-strands. We introduce the concept of "residue proba
Evidence for similar function of transmembrane segments in receptor and membrane-anchored proteins
β Scribed by Christopher J. Brandl; Raisa B. Deber; Lynn C. Hsu; G. Andrew Woolley; Xenia K. Young; Charles M. Deber
- Publisher
- Wiley (John Wiley & Sons)
- Year
- 1988
- Tongue
- English
- Weight
- 850 KB
- Volume
- 27
- Category
- Article
- ISSN
- 0006-3525
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β¦ Synopsis
Synopsis
Transmembrane (TM) regions of receptor proteins should have unique structural and/or chemical characteristics if these regions contain residues functional in TM signal transduction.
However, in a survey of the membrane-occurring residues in 37 integral membrane proteins, we found that amino acid compositions of TM regions of receptor proteins ( n = 11) could not be distinguished statistically from corresponding regions of membrane-anchored proteins (e.g., recognition molecules) with a functional external domain attached to a single hydrophobic membranespanning anchor segment ( n = 16). TM regions in both categories of proteins differed from the compositions of TM regions in membrane-transport proteins ( n = 10). The analysis implies that TM regions in receptor proteins may function mainly to anchor (and position) receptors in their cellular membranes, and therefore residues in receptors that participate in signal transduction need not be restricted to these regions. In addition to mechanisms involving receptor aggregation, ligand-activated conformational perturbation of a receptor external aqueous domain, resulting in membrane penetration of hydrophobic segment@) of this domain to produce intramembranous contact with its cytoplasmic domain, is hypothesized as a further possible mode of signal transduction.
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