𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Discrimination of fibroblast subtypes by multivariate analysis of gene expression

✍ Scribed by Emmanuel Spanakis; Danièle Brouty-Boyé


Book ID
101232888
Publisher
John Wiley and Sons
Year
1997
Tongue
French
Weight
121 KB
Volume
71
Category
Article
ISSN
0020-7136

No coin nor oath required. For personal study only.

✦ Synopsis


Fibroblasts and myofibroblasts from normal, fibrotic or tumoral breast tissues present multiple quantitative differences in gene expression even when grown in isolation. We were therefore prompted to investigate whether one could recognize various subtypes by their constitutive-gene expression profile. Quantitative autoradiographic data for 34 constitutively expressed transcripts were submitted to multivariate analysis of variance, followed by discriminant analysis and single linkage cluster analysis. Models assuming up to 8 putative fibroblast subtypes (among fibroblasts or myofibroblasts from breast skin, normal mammary stroma, tumor-adjacent "normal" stroma, post-radiation fibrosis lesions and benign or malignant tumors) and an epithelial-cell group used as an internal control resulted in 100% correct classification. Myofibroblasts from various origins clustered close to, although distinctly apart from, their corresponding alpha-smooth-muscle-actin-negative counterparts. Malignant tumor fibroblasts were phenotypically more distant from normal cells compared with other pathological types. Our results support the hypothesis of co-adaptive transformation of stromal and epithelial tissues during breast tumoral development and suggest that different types of fibroblasts give rise to different types of myofibroblasts. Discriminant analysis of quantitative molecular variation may be considered for the development of a powerful artificial-intelligence method for cell typing and should be particularly useful when no reliable discrete molecular markers are available.


📜 SIMILAR VOLUMES


Gene expression analysis of TFII-I modul
✍ Nyam-Osor Chimge; Ognoon Mungunsukh; Frank Ruddle; Dashzeveg Bayarsaihan 📂 Article 📅 2007 🏛 John Wiley and Sons 🌐 English ⚖ 199 KB

## Abstract TFII‐I is a founding member of a family of helix–loop–helix transcription factors involved in modulation of genes through interaction with various nuclear factors and chromatin remodeling complexes. Recent studies indicate that TFII‐I performs important function in cell physiology and m

Multivariate analysis of complex gene ex
✍ Joseph Beyene; David Tritchler 📂 Article 📅 2007 🏛 John Wiley and Sons 🌐 English ⚖ 122 KB

This paper summarizes contributions to group 12 of the 15th Genetic Analysis Workshop. The papers in this group focused on multivariate methods and applications for the analysis of molecular data including genotypic data as well as gene expression microarray measurements and clinical phenotypes. A r