Conformational analysis of polynucleotide chains. Double-stranded structures

✍ Scribed by F. G. Calascibetta; M. Dentini; P. De Santis; S. Morosetti

• Publisher: Wiley (John Wiley & Sons)
• Year: 1975
• Tongue: English
• Weight: 822 KB
• Volume: 14
• Category: Article
• ISSN: 0006-3525
• DOI: 10.1002/bip.1975.360140810

✦ Synopsis

Abstract

Conformational analysis of double‐stranded helical polynucleotides was carried out in terms of internal and external parameters, using semiempirical energy potential functions. The results obtained show that the structures proposed on the basis of the X‐ray analysis for A‐DNA and RNA's are almost identical to those corresponding to the conformational energy minima, whereas that proposed for B‐DNA still appears to suffer from conformational strains. On the other hand, the B‐DNA structure theoretically predicted is stabilized by both van der Waals energy and possible specific interactions with water molecules and counterions. This may explain the stability of the B form with respect to the A form at high relative humidity and ion strength. A possible role of the A + T fraction in stabilizing the B‐type DNA emerges in connection with its preferential ability to bind ions. This agrees with the results on the crystalline structures of GpC and ApU. For RNA's, the occurrence of only A‐type structures is explained as being due to the C(3′)‐endo puckering of ribose in a double helix.