Case-parents design for gene-environment interaction
β Scribed by Daniel J. Schaid
- Publisher
- John Wiley and Sons
- Year
- 1999
- Tongue
- English
- Weight
- 62 KB
- Volume
- 16
- Category
- Article
- ISSN
- 0741-0395
No coin nor oath required. For personal study only.
β¦ Synopsis
The scientific and public health implications of gene-environment interaction warrant that the most powerful study designs and methods of analysis be used. Because traditional case-control designs, which use nonrelated subjects, have demonstrated the need for large samples to detect interactions, alternative study designs may be worthwhile, such as sampling diseased cases and their parents. If the transmission of particular alleles from parents to their diseased child appears to be distorted from Mendelian expectation, then this suggests an etiologic association of the alleles with disease; if the frequency of transmission differs between exposed and nonexposed cases, then geneenvironment interaction is suggested. We present likelihood-based methods to assess interaction, as well as an extension of the transmission/disequilibrium test (TDT). For these statistical tests, we also derive methods to compute sample size and power. Comparisons of sample size requirements between the case-parents design and the case-control design indicate that the caseparents design can be more powerful to detect gene-environment interactions, particularly when the disease susceptible allele is rare. Also, one of the derived likelihood methods, based on additive effects of alleles, tended to be the most robust in terms of power for a broad range of genetic mechanisms, and so may be useful for broad applications to assess gene-environment interactions.
π SIMILAR VOLUMES
We assessed the sample size required for detecting gene-environment (G Γ E) interactions in a case-control study of complex diseases. The results suggest that large numbers of cases and controls will be required to detect G Γ E interaction for some odds ratio and exposure frequency combinations. The
Association studies using diseased cases and their parents avoid biases due to population stratification, and the transmission/disequilibrium test (TDT) is a popular method of analysis. Sample size and power calculations for the TDT method have been reported, but often for the special situation of m
## Abstract Caseβonly studies are often used to identify interactions between a genetic factor and an environmental factor under the assumption both factors are independent in the population. However, interpreting a statistical association between the genetic and the environmental factors among the
## Abstract We have previously reported a threefold risk of cleft palate only (CPO) among children homozygous for the less common allele A2 at the TaqI marker site of the transforming growth factor alpha gene (__TGFA__) (Jugessur et al. [2003a] Genet. Epidemiol. 24:230β239). Here we assess possible