<div>This contributed volume explores the emerging intersection between big data analytics and genomics. Recent sequencing technologies have enabled high-throughput sequencing data generation for genomics resulting in several international projects which have led to massive genomic data accumulation
Big Data Analytics in Genomics
β Scribed by Ka-Chun Wong (eds.)
- Publisher
- Springer International Publishing
- Year
- 2016
- Tongue
- English
- Leaves
- 426
- Edition
- 1
- Category
- Library
No coin nor oath required. For personal study only.
β¦ Synopsis
This contributed volume explores the emerging intersection between big data analytics and genomics. Recent sequencing technologies have enabled high-throughput sequencing data generation for genomics resulting in several international projects which have led to massive genomic data accumulation at an unprecedented pace. To reveal novel genomic insights from this data within a reasonable time frame, traditional data analysis methods may not be sufficient or scalable, forcing the need for big data analytics to be developed for genomics. The computational methods addressed in the book are intended to tackle crucial biological questions using big data, and are appropriate for either newcomers or veterans in the field.This volume offers thirteen peer-reviewed contributions, written by international leading experts from different regions, representing Argentina, Brazil, China, France, Germany, Hong Kong, India, Japan, Spain, and the USA. In particular, the book surveys three main areas: statistical analytics, computational analytics, and cancer genome analytics. Sample topics covered include: statistical methods for integrative analysis of genomic data, computation methods for protein function prediction, and perspectives on machine learning techniques in big data mining of cancer. Self-contained and suitable for graduate students, this book is also designed for bioinformaticians, computational biologists, and researchers in communities ranging from genomics, big data, molecular genetics, data mining, biostatistics, biomedical science, cancer research, medical research, and biology to machine learning and computer science. Readers will find this volume to be an essential read for appreciating the role of big data in genomics, making this an invaluable resource for stimulating further research on the topic.
β¦ Table of Contents
Front Matter....Pages i-viii
Front Matter....Pages 1-1
Introduction to Statistical Methods for Integrative Data Analysis in Genome-Wide Association Studies....Pages 3-23
Robust Methods for Expression Quantitative Trait Loci Mapping....Pages 25-88
Causal Inference and Structure Learning of GenotypeβPhenotype Networks Using Genetic Variation....Pages 89-143
Genomic Applications of the NeymanβPearson Classification Paradigm....Pages 145-167
Front Matter....Pages 169-169
Improving Re-annotation of Annotated Eukaryotic Genomes....Pages 171-195
State-of-the-Art in SmithβWaterman Protein Database Search on HPC Platforms....Pages 197-223
A Survey of Computational Methods for Protein Function Prediction....Pages 225-298
Genome-Wide Mapping of Nucleosome Position and Histone Code Polymorphisms in Yeast....Pages 299-313
Front Matter....Pages 315-315
Perspectives of Machine Learning Techniques in Big Data Mining of Cancer....Pages 317-336
Mining Massive Genomic Data for Therapeutic Biomarker Discovery in Cancer: Resources, Tools, and Algorithms....Pages 337-355
NGS Analysis of Somatic Mutations in Cancer Genomes....Pages 357-372
OncoMiner: A Pipeline for Bioinformatics Analysis of Exonic Sequence Variants in Cancer....Pages 373-396
A Bioinformatics Approach for Understanding GenotypeβPhenotype Correlation in Breast Cancer....Pages 397-428
β¦ Subjects
Computational Biology/Bioinformatics;Data Mining and Knowledge Discovery;Statistics for Life Sciences, Medicine, Health Sciences;Genetics and Population Dynamics
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