𝔖 Bobbio Scriptorium
✦   LIBER   ✦

An Algorithm Combining DNA and Protein Alignment

✍ Scribed by Jotun Hein

Publisher
Elsevier Science
Year
1994
Tongue
English
Weight
205 KB
Volume
167
Category
Article
ISSN
0022-5193

No coin nor oath required. For personal study only.

✦ Synopsis

An algorithm is presented that aligns two DNA sequences minimizing the overall amount of evolution that the associated proteins have experienced. It is generalized to minimizing a weighted average of protein and DNA evolution.

📜 SIMILAR VOLUMES

Protein structure alignment using a gene
Protein structure alignment using a genetic algorithm
✍ Joseph D. Szustakowski; Zhiping Weng 📂 Article 📅 2000 🏛 John Wiley and Sons 🌐 English ⚖ 342 KB 👁 2 views

We have developed a novel, fully automatic method for aligning the three-dimensional structures of two proteins. The basic approach is to first align the proteins' secondary structure elements and then extend the alignment to include any equivalent residues found in loops or turns. The initial secon

Combining optical tweezers and scanning
Combining optical tweezers and scanning probe microscopy to study DNA–protein interactions
✍ Jurgen H.G. Huisstede; Vinod Subramaniam; Martin L. Bennink 📂 Article 📅 2006 🏛 John Wiley and Sons 🌐 English ⚖ 444 KB

## Abstract We present the first results obtained with a new instrument designed and built to study DNA–protein interactions at the single molecule level. This microscope combines optical tweezers with scanning probe microscopy and allows us to locate DNA‐binding proteins on a single suspended DNA

WATGEN: An algorithm for modeling water
WATGEN: An algorithm for modeling water networks at protein–protein interfaces
✍ Huynh-Hoa Bui; Alexandra J. Schiewe; Ian S. Haworth 📂 Article 📅 2007 🏛 John Wiley and Sons 🌐 English ⚖ 474 KB

## Abstract Water molecules at protein–protein interfaces contribute to the close packing of atoms and ensure complementarity between the protein surfaces, as well as mediating polar interactions. Therefore, modeling of interface water is of importance in understanding the structural basis of biomo

Combining DNA and protein vaccines for e
Combining DNA and protein vaccines for early life immunization against respiratory syncytial virus in mice
✍ Xavier Martinez; Xiaomao Li; Jiri Kovarik; Michel Klein; Paul-Henri Lambert; Cla 📂 Article 📅 1999 🏛 John Wiley and Sons 🌐 English ⚖ 192 KB

Early life responses to respiratory syncytial virus (RSV)-F DNA and RSV-F protein immunization were studied in murine models of neonatal immunization. RSV-F DNA induced similar antibody (Ab) responses, antigen-specific IFN-+ production and cytotoxic T lymphocyte (CTL) responses in 1-week-old and adu

An automated algorithm for combining mul
An automated algorithm for combining multivoxel MRS data acquired with phased-array coils
✍ Nimrod Maril; Robert E. Lenkinski 📂 Article 📅 2005 🏛 John Wiley and Sons 🌐 English ⚖ 408 KB

## Abstract ## Purpose To develop a fully automated algorithm for combining multivoxel magnetic resonance spectroscopy (MRS) data acquired with a phased‐array coil. ## Materials and Methods The frequency‐domain fitting method of LCModel (Provencher SW, Magn Reson Med 1993;30:672–679) was utilize