𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Adaptive Mesh Enrichment for the Poisson–Boltzmann Equation

✍ Scribed by Pavel Dyshlovenko


Publisher
Elsevier Science
Year
2001
Tongue
English
Weight
100 KB
Volume
172
Category
Article
ISSN
0021-9991

No coin nor oath required. For personal study only.

✦ Synopsis


An adaptive mesh enrichment procedure for a finite-element solution of the twodimensional Poisson-Boltzmann equation is described. The mesh adaptation is performed by subdividing the cells using information obtained in the previous step of the solution and next rearranging the mesh to be a Delaunay triangulation. The procedure allows the gradual improvement of the quality of the solution and adjustment of the geometry of the problem. The performance of the proposed approach is illustrated by applying it to the problem of two identical colloidal particles in a symmetric electrolyte.


📜 SIMILAR VOLUMES


An automatic three-dimensional finite el
✍ Cortis, Christian M.; Friesner, Richard A. 📂 Article 📅 1997 🏛 John Wiley and Sons 🌐 English ⚖ 494 KB 👁 2 views

We present an automatic three-dimensional mesh generation system for the solution of the Poisson᎐Boltzmann equation using a finite element discretization. The different algorithms presented allow the construction of a tetrahedral mesh using a predetermined spatial distribution of vertices adapted to

Numerical solution of the Poisson-Boltzm
✍ Cortis, Christian M.; Friesner, Richard A. 📂 Article 📅 1997 🏛 John Wiley and Sons 🌐 English ⚖ 252 KB 👁 2 views

The automatic three-dimensional mesh generation system for molecular geometries developed in our laboratory is used to solve the Poisson᎐Boltzmann equation numerically using a finite element method. For a number of different systems, the results are found to be in good agreement with those obtained

Efficient solution technique for solving
✍ Abdallah Sayyed–Ahmad; Kagan Tuncay; Peter J. Ortoleva 📂 Article 📅 2004 🏛 John Wiley and Sons 🌐 English ⚖ 323 KB 👁 1 views

## Abstract The Poisson–Boltzmann (PB) equation has been extensively used to analyze the energetics and structure of proteins and other significant biomolecules immersed in electrolyte media. A new highly efficient approach for solving PB‐type equations that allows for the modeling of many‐atoms st

Multigrid solution of the Poisson—Boltzm
✍ Michael Holst; Faisal Saied 📂 Article 📅 1993 🏛 John Wiley and Sons 🌐 English ⚖ 881 KB

A multigrid method is presented for the numerical solution of the linearized Poisson-Boltzmann equation arising in molecular biophysics. The equation is discretized with the finite volume method, and the numerical solution of the discrete equations is accomplished with multiple grid techniques origi