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13Cα-NMR assignments of melittin in methanol and chemical shift correlations with secondary structure

✍ Scribed by Paul Buckley; Arthur S. Edison; Marvin D. Kemple; Franklyn G. Prendergast


Book ID
104660131
Publisher
Springer Netherlands
Year
1993
Tongue
English
Weight
868 KB
Volume
3
Category
Article
ISSN
0925-2738

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✦ Synopsis


Melittin is a naturally occurring hexacosa peptide which forms an amphiphilic helix in methanol, a random coil in water, and a tetramer of helices at basic pH or in the presence of a high salt concentration. The monomeric structure in methanol has been well characterized by proton NMR (Pastore et al. (1989) Eur. Biophys. J., 16,[363][364][365][366][367]. In the present paper, chemical shifts of the backbone ~x-carbons of melittin in methanol were determined by mapping previously published a-proton shifts (Bazzo et al. (1988) Eur. J. Biochem., 173,[139][140][141][142][143][144][145][146], to natural abundance {1H}13C cross peaks appearing in the 2D heteronuclear multiple-quantum NMR spectrum. Changes in chemical shifts consequent to stepwise increases in the percentage of water in a mixed methanol/water solvent system were observed in similar spectra. The txcarbon shifts varied more smoothly than the corresponding ct-proton shifts and were found to correlate with the transition from the helix to the random coil conformer in parallel with changes in the circular dichroism spectrum. Chemical shifts of this peptide are interpreted with regard to the current database of assignments in proteins of known 3D structure (Wishart et al. (1991) J. Mol. Biol., 222,. The N-terminal region of the peptide shows increased flexibility at lower methanol concentrations, as evidenced by the merger of the a-proton resonances of G1 (at 40% and 15% methanol) and G3 (at 15% methanol). Conformational exchange rates for G1 and G3 were estimated by comparison of the experimental spectra with simulated spectra and found to be as large as 4000 s -1 for G1 in 40% and 15% methanol and 600 s -~ for G3 in 15% methanol. Overall, these ~H and ~3C chemical shift data support the description of monomeric melittin in methanol currently evolving in the literature and suggest a structure composed of a linked pair of helices with different structural stabilities, each of which experiences dynamical fraying at its free terminus.


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The assignment of 13C NMR shift data in
✍ J. M. Luteijn; A. Van Veldhuizen; A. De Groot 📂 Article 📅 1982 🏛 John Wiley and Sons 🌐 English ⚖ 232 KB

## Abstract The ^13^C NMR spectra of a number of partial clerodane structures and analogous compounds were recorded. The information thus obtained enabled the assignment of the ^13^C NMR shifts in a number of naturally occurring clerodanes.