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Transcript analysis of 250 novel yeast genes from chromosome XIV

✍ Scribed by Planta, Rudi J.; Brown, Alistair J. P.; Cadahia, Jose L.; Esperanza Cerdan, M.; De Jonge, Martine; Gent, Manda E.; Hayes, Andrew; Kolen, Carin P. A. M.; Lombardia, Luis J.; Sefton, Mark; Oliver, Stephen G.; Thevelein, Johan; Tournu, Helene; van Delft, Yvon J.; Verbart, Dennis J.; Winderickx, Joris


Publisher
John Wiley and Sons
Year
1999
Tongue
English
Weight
475 KB
Volume
15
Category
Article
ISSN
0749-503X

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✦ Synopsis


The European Functional Analysis Network (EUROFAN) is systematically analysing the function of novel Saccharomyces cerevisiae genes revealed by genome sequencing. As part of this effort our consortium has performed a detailed transcript analysis for 250 novel ORFs on chromosome XIV. All transcripts were quantified by Northern analysis under three quasi-steady-state conditions (exponential growth on rich fermentative, rich non-fermentative, and minimal fermentative media) and eight transient conditions (glucose derepression, glucose upshift, stationary phase, nitrogen starvation, osmo-stress, heat-shock, and two control conditions). Transcripts were detected for 82% of the 250 ORFs, and only one ORF did not yield a transcript of the expected length (YNL285w). Transcripts ranged from low (62%), moderate (16%) to high abundance (2%) relative to the ACT1 mRNA. The levels of 73% of the 206 chromosome XIV transcripts detected fluctuated in response to the transient states tested. However, only a small number responded strongly to the transients: eight ORFs were induced upon glucose upshift; five were repressed by glucose; six were induced in response to nitrogen starvation; three were induced in stationary phase; five were induced by osmo-stress; four were induced by heat-shock. These data provide useful clues about the general function of these ORFs and add to our understanding of gene regulation on a genome-wide basis.


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