The primary aim of this contribution consists in providing a "taxonomy" of the computational tools and concepts that are currently available to tackle morphological problems in paleoanthropology. The second aim is to show that there are mutual links between the three aspects of computation. In paleo
thermocalc — A poor man's approach to computational thermochemistry
✍ Scribed by Arnim Hellweg; Michael Diedenhofen; Uwe Huniar
- Publisher
- John Wiley and Sons
- Year
- 2012
- Tongue
- English
- Weight
- 135 KB
- Volume
- 33
- Category
- Article
- ISSN
- 0192-8651
No coin nor oath required. For personal study only.
✦ Synopsis
Abstract
We present thermocalc, a Perl module to perform the automated calculation of atomization energies and heats of formation for lists of molecules. The methods used are based on density functional theory and second‐order perturbation theory to ensure that data sets of medium sized to large molecules can be run at reasonable throughput rates. The quantum chemical calculations are performed using the program package TURBOMOLE in a three‐step protocol. In a first step, a pre‐optimization of the structure and a zero‐point energy calculation are performed. As second step, a geometry optimization is being carried out, and the last step is a single point energy calculation. The level of theory used in the different steps can be modified by the user to allow for customized protocols. The performance of example protocols is investigated on different test sets of molecules. In the course of this work, a simple, but efficient one‐parameter correction term based on the shared electron numbers has been developed, which reduces the error of calculated heats of formation significantly. © 2012 Wiley Periodicals, Inc.
📜 SIMILAR VOLUMES
In many stages of a typical computational simulation, the user has a requirement to extract data which is not always in a readily available form. Typical examples include mesh quality statistics, where the quality measure is typically defined using an expression involving the co-ordinates of each me
## Abstract A predictive model that can correlate the chemical composition of a biomaterial with the biological response of cells that are in contact with that biomaterial would represent a major advance and would facilitate the rational design of new biomaterials. As a first step toward this goal,
The description of ÿnite rotations of beam-like structures using rotational parameters is not the most e cient, from a computational standpoint, because of the non-vectorial nature of ÿnite rotations in three-dimensional space. In the present study, the classical rigid cross-section assumption is ab