𝔖 Bobbio Scriptorium
✦   LIBER   ✦

The modular structure of Kauffman networks

✍ Scribed by U. Bastolla; G. Parisi


Publisher
Elsevier Science
Year
1998
Tongue
English
Weight
1003 KB
Volume
115
Category
Article
ISSN
0167-2789

No coin nor oath required. For personal study only.

✦ Synopsis


This is the second paper of a series of two about the structural properties that influence the asymptotic dynamics of random boolean networks. Here we study the functionally independent clusters in which the relevant elements, introduced and studied in our first paper [U. Bastolla, G. Parisi, Physica D 115 (1998) 203-218], are subdivided. We show that the phase transition in random boolean networks can also be described as a percolation transition. The statistical properties of the clusters of relevant elements (that we call modules) give an insight on the scaling behavior of the attractors of the critical networks that, according to Kauffman, have a biological analogy as a model of genetic regulatory systems.


πŸ“œ SIMILAR VOLUMES


Learning of modular structured networks
✍ Masumi Ishikawa πŸ“‚ Article πŸ“… 1995 πŸ› Elsevier Science 🌐 English βš– 755 KB

Learning of large-scale neural networks suffers from computational cost and the local minima problem. One solution to these difficulties is the use of modular structured networks. Proposed here is the learning of modular networks using structural learning with forgetting. It enables the formation of

A Numerical Study of the Critical Line o
✍ U. Bastolla; G. Parisi πŸ“‚ Article πŸ“… 1997 πŸ› Elsevier Science 🌐 English βš– 288 KB

Kauffman networks were introduced in 1969 as a model of genetic regulatory systems. One of the most striking successes of this model is its ability to reproduce, for a critical value of its parameters, the observed scaling laws of the average cell replication time and of the average number of cell t

Analysis of the behaviour of Kauffman bi
✍ R.A. Sherlock πŸ“‚ Article πŸ“… 1979 πŸ› Springer 🌐 English βš– 806 KB

The state-transition matrix description of Kauffman binary networks described in the previous paper is further developed to obtain an analytical expression for the fraction of states involved in limit cycles as a function of the network size and connectivity. The result obtained for totally connecte

Modular Response Analysis of Cellular Re
✍ FRANK J. BRUGGEMAN; HANS V. WESTERHOFF; JAN B. HOEK; BORIS N. KHOLODENKO πŸ“‚ Article πŸ“… 2002 πŸ› Elsevier Science 🌐 English βš– 246 KB

The sheer complexity of intracellular regulatory networks, which involve signal transducing, metabolic, and genetic circuits, hampers our ability to carry out a quantitative analysis of their functions. Here, we describe an approach that greatly simplifies this type of analysis by capitalizing on th