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The Influence of Amino Acid Protonation States on Molecular Dynamics Simulations of the Bacterial Porin OmpF

✍ Scribed by Varma, Sameer; Chiu, See-Wing; Jakobsson, Eric


Book ID
119919382
Publisher
Biophysical Society
Year
2006
Tongue
English
Weight
580 KB
Volume
90
Category
Article
ISSN
0006-3495

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Molecular dynamics simulations were applied to helix folding of alanine-based synthetic peptides. A single alanine residue in the middle of the peptide was substituted with various nonpolar amino acids (leucine, isoleucine, valine, glycine, or proline) to study the effect of the substitution. Unlike