Structure and dynamics of hydrated NH: An ab initio QM/MM molecular dynamics simulation
✍ Scribed by Pathumwadee Intharathep; Anan Tongraar; Kritsana Sagarik
- Publisher
- John Wiley and Sons
- Year
- 2005
- Tongue
- English
- Weight
- 367 KB
- Volume
- 26
- Category
- Article
- ISSN
- 0192-8651
No coin nor oath required. For personal study only.
✦ Synopsis
Abstract
A combined ab initio quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulation has been performed to investigate solvation structure and dynamics of NH in water. The most interesting region, the sphere includes an ammonium ion and its first hydration shell, was treated at the Hartree–Fock level using DZV basis set, while the rest of the system was described by classical pair potentials. On the basis of detailed QM/MM simulation results, the solvation structure of NH is rather flexible, in which many water molecules are cooperatively involved in the solvation shell of the ion. Of particular interest, the QM/MM results show fast translation and rotation of NH in water. This phenomenon has resulted from multiple coordination, which drives the NH to translate and rotate quite freely within its surrounding water molecules. In addition, a “structure‐breaking” behavior of the NH is well reflected by the detailed analysis on the water exchange process and the mean residence times of water molecules surrounding the ion. © 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1329–1338, 2005
📜 SIMILAR VOLUMES
## Abstract Structural and dynamical properties of the Cr(III) ion in aqueous solution have been investigated using a combined __ab initio__ quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulation. The hydration structure of Cr(III) was determined in terms of radial distributi
## Abstract A hybrid __ab initio__ QM/MM molecular dynamics simulation at the Hartree‐Fock level has been performed to investigate structural and dynamical parameters of the V^3+^ ion in dilute aqueous solution. A distorted octahedral structure with the average V^3+^‐O distance of 1.99 Å is evaluat
## Abstract Born‐Oppenheimer __ab initio__ QM/MM molecular dynamics simulation with umbrella sampling is a state‐of‐the‐art approach to calculate free energy profiles of chemical reactions in complex systems. To further improve its computational efficiency, a mass‐scaling method with the increased