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Structure and dynamics of hydrated NH: An ab initio QM/MM molecular dynamics simulation

✍ Scribed by Pathumwadee Intharathep; Anan Tongraar; Kritsana Sagarik


Publisher
John Wiley and Sons
Year
2005
Tongue
English
Weight
367 KB
Volume
26
Category
Article
ISSN
0192-8651

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✦ Synopsis


Abstract

A combined ab initio quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulation has been performed to investigate solvation structure and dynamics of NH in water. The most interesting region, the sphere includes an ammonium ion and its first hydration shell, was treated at the Hartree–Fock level using DZV basis set, while the rest of the system was described by classical pair potentials. On the basis of detailed QM/MM simulation results, the solvation structure of NH is rather flexible, in which many water molecules are cooperatively involved in the solvation shell of the ion. Of particular interest, the QM/MM results show fast translation and rotation of NH in water. This phenomenon has resulted from multiple coordination, which drives the NH to translate and rotate quite freely within its surrounding water molecules. In addition, a “structure‐breaking” behavior of the NH is well reflected by the detailed analysis on the water exchange process and the mean residence times of water molecules surrounding the ion. © 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1329–1338, 2005


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