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Solvation dynamics in a protein–surfactant complex

✍ Scribed by Partha Dutta; Pratik Sen; Arnab Halder; Saptarshi Mukherjee; Sobhan Sen; Kankan Bhattacharyya


Publisher
Elsevier Science
Year
2003
Tongue
English
Weight
216 KB
Volume
377
Category
Article
ISSN
0009-2614

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✦ Synopsis


Solvation dynamics in the denatured state of a protein, lysozyme (denatured by sodium dodecyl sulfate, SDS) is markedly slower than that in the native state. For coumarin 153 bound to lysozyme, the average solvation time, hs s i is 330 ps. In the lysozyme-SDS complex, the solvation dynamics is markedly slower with hs s i ¼ 7250 ps. On addition of dithiothreitol (DTT) to the lysozyme-SDS complex, when the di-sulfide bonds are destroyed, hs s i is found to be 1140 ps. The slow dynamics in the denatured protein is attributed to the polymer chain dynamics and the exchange of bound and free water molecules.


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✍ Taku Mizukami; Hiroaki Saito; Shuhei Kawamoto; Takeshi Miyakawa; Masashi Iwayama 📂 Article 📅 2011 🏛 John Wiley and Sons 🌐 English ⚖ 891 KB

## Abstract To investigate the relationship between structural change and the solvation effect, we estimated the solvation free energy or excess chemical potential (ECP) of a globular protein by the energy representation method for the protein structure obtained by a molecular dynamic simulation. A