## Abstract A computer program has been developed to aid the analysis of molecular dynamics trajectories. The program is tuned for macromolecular large‐scale problems and supports features such as removal of global translations‐rotations of the solute, calculation of average distance maps and their
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✍ Scribed by Fokke Dijkstra; Joop H. van Lenthe
- Publisher
- John Wiley and Sons
- Year
- 2001
- Tongue
- English
- Weight
- 315 KB
- Volume
- 22
- Category
- Article
- ISSN
- 0192-8651
- DOI
- 10.1002/jcc.1035
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✦ Synopsis
Abstract
A parallel version of the valence bond program TURTLE has been developed. In this version the calculation of matrix elements is distributed over the processors. The implementation has been done using the message‐passing interface (MPI), and is, therefore, portable. The parallel version of the program is shown to be quite efficient with a speed‐up of 55 at 64 processors. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 665–672, 2001
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