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๐Ÿ“

Simple Mathematical Models of Gene Regulatory Dynamics

โœ Scribed by Michael C. Mackey, Moisรฉs Santillรกn, Marta Tyran-Kamiล„ska, Eduardo S. Zeron (auth.)


Publisher
Springer International Publishing
Year
2016
Tongue
English
Leaves
128
Series
Lecture Notes on Mathematical Modelling in the Life Sciences
Edition
1
Category
Library

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โœฆ Synopsis


This is a short and self-contained introduction to the field of mathematical modeling of gene-networks in bacteria. As an entry point to the field, we focus on the analysis of simple gene-network dynamics. The notes commence with an introduction to the deterministic modeling of gene-networks, with extensive reference to applicable results coming from dynamical systems theory. The second part of the notes treats extensively several approaches to the study of gene-network dynamics in the presence of noiseโ€”either arising from low numbers of molecules involved, or due to noise external to the regulatory process. The third and final part of the notes gives a detailed treatment of three well studied and concrete examples of gene-network dynamics by considering the lactose operon, the tryptophan operon, and the lysis-lysogeny switch. The notes contain an index for easy location of particular topics as well as an extensive bibliography of the current literature. The target audience of these notes are mainly graduates students and young researchers with a solid mathematical background (calculus, ordinary differential equations, and probability theory at a minimum), as well as with basic notions of biochemistry, cell biology, and molecular biology. They are meant to serve as a readable and brief entry point into a field that is currently highly active, and will allow the reader to grasp the current state of research and so prepare them for defining and tackling new research problems.

โœฆ Table of Contents


Front Matter....Pages i-xiv
Front Matter....Pages 1-1
Generic Deterministic Models of Prokaryotic Gene Regulation....Pages 3-6
General Dynamic Considerations ....Pages 7-27
Front Matter....Pages 29-30
Master Equation Modeling Approaches....Pages 31-47
Noise Effects in Gene Regulation: Intrinsic Versus Extrinsic....Pages 49-69
Front Matter....Pages 71-71
The Lactose Operon....Pages 73-85
The Tryptophan Operon....Pages 87-97
The Lysis-Lysogeny Switch....Pages 99-114
Back Matter....Pages 115-124

โœฆ Subjects


Gene Expression;Mathematical and Computational Biology;Systems Biology;Applications of Mathematics;Ordinary Differential Equations;Probability Theory and Stochastic Processes


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