The cost of experiments aimed at determining linkage between marker loci and quantitative trait loci (QTL) was investigated as a function of marker spacing and number of individuals scored. It was found that for a variety of experimental designs, fairly wide marker spacings (ca. 50 cM) are optimum o
Sequential sampling in determining linkage between marker loci and quantitative trait loci
โ Scribed by U. Motro; M. Soller
- Publisher
- Springer
- Year
- 1993
- Tongue
- English
- Weight
- 668 KB
- Volume
- 85-85
- Category
- Article
- ISSN
- 0040-5752
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โฆ Synopsis
As compared to classical, fixed sample size techniques, simulation studies showed that a proposed sequential sampling procedure can provide a substantial decrease (up to 50%, in some cases) in the mean sample size required for the detection of linkage between marker loci and quantitative trait loci. Sequential sampling with truncation set at the required sample size for the non-sequential test, produced a modest further decrease in mean sample size, accompanied by a modest increase in error probabilities. Sequential sampling with observations taken in groups produced a noticeable increase in mean sample size, with a considerable decrease in error probabilities, as compared to straightforward sequential sampling. It is concluded that sequential sampling has a particularly useful application to experiments aimed at investigating the genetics of differences between lines or strains that differ in some single outstanding trait.
๐ SIMILAR VOLUMES
By making use of pedigree information and information on marker-genotypes of the parent and F-1 individuals crossed to form an F-2 population, it is possible to carry out a linkage analysis between marker loci and loci affecting quantitative traits in a cross between segregating parent populations t
Relative-pair methods for detection of linkage between a quantitative trait and a marker locus have been proposed by a number of authors [e.g., Haseman and Elston, Behav Genet 3-19,1972; Amos and Elston, Genet Epidemiot 349-360,19891. However, development of tests of significance that combine inform
Prior information on gene effects at individual quantitative trait loci (QTL) and on recombination rates between marker loci and QTL is derived. The prior distribution of QTL gene effects is assumed to be exponential with major effects less likely than minor ones. The prior probability of linkage be