## Abstract Protein–protein docking has made much progress in recent years, but challenges still exist. Here we present the application of our docking approach HoDock in CAPRI. In this approach, a binding site prediction is implemented to reduce docking sampling space and filter out unreasonable do
Scoring protein–protein docked structures based on the balance and tightness of binding
✍ Scribed by Y.H. Yu; B.Z. Lu; J.G. Han; P.F. Zhang
- Book ID
- 111588816
- Publisher
- Springer Netherlands
- Year
- 2004
- Tongue
- English
- Weight
- 171 KB
- Volume
- 18
- Category
- Article
- ISSN
- 0920-654X
No coin nor oath required. For personal study only.
📜 SIMILAR VOLUMES
## Abstract The Biomolecular Ligand Energy Evaluation Protocol (BLEEP) is a knowledge‐based potential derived from high‐resolution X‐ray structures of protein–ligand complexes. The performance of this potential in ranking the hypothetical structures resulting from a docking study has been evaluated
## Abstract We present results of testing the ability of eleven popular scoring functions to predict native docked positions using a recently developed method (Ruvinsky and Kozintsev, J Comput Chem 2005, 26, 1089) for estimation the entropy contributions of relative motions to protein‐ligand bindin