Atomic partial charges for three model systems that mimic the metal-ligand moiety of the active site in the enzyme Cu, Zn superoxide dismutase (SOD) have been calculated at the ab initio level. The model systems include copper and zinc complexes with imidazole, formate and ammonia ligands. The parti
Role of the electrostatic loop charged residues in Cu, Zn superoxide dismutase
β Scribed by Fabio Polticelli; Andrea Battistoni; Peter O'Neill; Giuseppe Rotilio; Alessandro Desideri
- Publisher
- Cold Spring Harbor Laboratory Press
- Year
- 1998
- Tongue
- English
- Weight
- 566 KB
- Volume
- 7
- Category
- Article
- ISSN
- 0961-8368
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β¦ Synopsis
Abstract
We have expressed and characterized a mutant of Xenopus laevis Cu, Zn superoxide dismutase in which four highly conserved charged residues belonging to the electrostatic loop have been replaced by neutral side chains: Lys120 β Leu, Asp130 β Gln, Glu131 β Gln, and Lys134 β Thr. At low ionic strength, the mutant enzyme is one of the fastest superoxide dismutases ever assayed (k = 6. 7 Γ 10^9^ M^β1^ s^β1^, at pH 7 and ΞΌ = 0. 02 M). Brownian dynamics simulations give rise to identical enzymeβsubstrate association rates for both wildβtype and mutant enzymes, ruling out the possibility that enhancement of the activity is due to pure electrostatic factors. Comparative analysis of the experimental catalytic rate of the quadruple and single mutants reveals the nonadditivity of the mutation effects, indicating that the hyperefficiency of the mutant is due to a decrease of the energy barrier and/or to an alternative pathway for the diffusion of superoxide within the active site channel. At physiological ionic strength the catalytic rate of the mutant at neutral pH is similar to that of the wildβtype enzyme as it is to the catalytic rate pH dependence. Moreover, mutation effects are additive. These results show that, at physiological salt conditions, electrostatic loop charged residues do not influence the diffusion pathway of the substrate and, if concomitantly neutralized, are not essential for high catalytic efficiency of the enzyme, pointing out the role of the metal cluster and of the invariant Arg141 in determining the local electrostatic forces facilitating the diffusion of the substrate towards the active site.
π SIMILAR VOLUMES
We used Brownian dynamics simulations of substrate 0, encounters with the enzyme bovine erythrocyte Cu, Zn superoxide dismutase (SOD) to study the effects of multiple charge modifications in the enzyme on the kinetics of its diffusion-controlled reaction. When the charges of two or three residues we
The crystallographic structure of bovine superoxide dismutase has been used as a template for the graphic reconstruction of the three-dimensional structures of the two Xenopus laevis variants (SchininΓ , M.E. et al. Arch. Biochem. Biophys. 272:507-515, 1989). In these models the structure-essential r