We consider a continuous space which models the set of all phylogenetic trees having a fixed set of leaves. This space has a natural metric of nonpositive curvature, giving a way of measuring distance between phylogenetic trees and providing some procedures for averaging or combining several trees w
Reducing the space requirement of suffix trees
โ Scribed by Stefan Kurtz
- Publisher
- John Wiley and Sons
- Year
- 1999
- Tongue
- English
- Weight
- 202 KB
- Volume
- 29
- Category
- Article
- ISSN
- 0038-0644
No coin nor oath required. For personal study only.
โฆ Synopsis
We show that suffix trees store various kinds of redundant information. We exploit these redundancies to obtain more space efficient representations. The most space efficient of our representations requires 20 bytes per input character in the worst case, and 10.1 bytes per input character on average for a collection of 42 files of different type. This is an advantage of more than 8 bytes per input character over previous work. Our representations can be constructed without extra space, and as fast as previous representations. The asymptotic running times of suffix tree applications are retained.
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