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Quantitative Phosphoproteomics Methods Based on Isoelectric Focusing and 18O Labeling Method

✍ Scribed by Shao-Hui SUI; Jing-Lan WANG; Wei JIA; Zhuang LU; Jin-Feng LIU; Li-Na SONG; Yun CAI; Xiao-Hong QIAN


Book ID
104452529
Publisher
Elsevier Science
Year
2008
Tongue
Chinese
Weight
482 KB
Volume
36
Category
Article
ISSN
1872-2040

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✦ Synopsis


For the analysis of quantitative phosphoproteomics, both qualitative and quantitative strategies are needed to be studied. Therefore, 18 O labeling method was used to label the tryptic phosphopeptides in this study. The labeling condition including the labeling time and the inactivation of the trypsin after labeled were optimized. The experimental results indicated that the incorporation of oxygen-18 isotopes for almost all peptides but the C-terminal peptides not ending on a lysine or an arginine could drive to 100% with tryptic catalyzing in the KH 2 PO 4 buffer system (pH 4-5) for 19-24 h at 37 °C. And tris(2-carboxyethyl)-phosphine chosen as the inactivation of trypsin could effectively inhibit the exchange of incorporated oxygen-18 isotopes with oxygen-16 isotopes. Then, the phosphopeptides enrichment technology IPG-IEF was built, 491 phosphosites, 362 phosphopeptides, and 356 phosphoproteins were identified from HepG2 cells. This suggested that IPG-IEF was effective in the phosphopeptides enrichment analysis on a large scale and could be well compatible with 18 O labeling method. Finally, combining with LTQ-FTICR mass spectrometry, 18 O-IPG-IEF-LTQ-FTICR was built and demonstrated to be effective in qualitative and quantitative phosphoproteomics study by the experiment results. This study provided useful technology for quantitative phosphoproteome.


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