𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Protein–protein docking with multiple residue conformations and residue substitutions

✍ Scribed by Lorber, David M. (author);Udo, Maria K. (author);Shoichet, Brian K. (author)

Book ID
111753307
Publisher
Wiley
Year
2002
Tongue
English
Weight
924 KB
Volume
11
Category
Article
ISSN
0961-8368

No coin nor oath required. For personal study only.

📜 SIMILAR VOLUMES

Integrating atom-based and residue-based
Integrating atom-based and residue-based scoring functions for protein–protein docking
✍ Thom Vreven; Howook Hwang; Zhiping Weng 📂 Article 📅 2011 🏛 Cold Spring Harbor Laboratory Press 🌐 English ⚖ 460 KB

## Abstract Most scoring functions for protein–protein docking algorithms are either atom‐based or residue‐based, with the former being able to produce higher quality structures and latter more tolerant to conformational changes upon binding. Earlier, we developed the ZRANK algorithm for reranking

Terminal residues in protein chains: Res
Terminal residues in protein chains: Residue preference, conformation, and interaction
✍ Debnath Pal; Pinak Chakrabarti 📂 Article 📅 2000 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 142 KB 👁 1 views

The known protein structures have been analyzed to find out if there is any pattern in the type of residues used and their conformation at the two terminal positions of the polypeptide chains. While the N-terminal position is overwhelmingly occupied by Met (followed by Ala and Ser), the preference f

Empirical prediction of protein pKavalue
Empirical prediction of protein pKavalues with residue mutation
✍ Steven K. Burger; Paul W. Ayers 📂 Article 📅 2011 🏛 John Wiley and Sons 🌐 English ⚖ 385 KB

## Abstract A fast, empirical method, Mut‐pKa, is presented for predicting the p__K__~a~ values of ionizable residues in proteins based on mutation. The method compares the effect of mutating each residue that may act as a hydrogen bond donor or acceptor for the ionizable residue. The energetic eff

The effect of the L-azetidine-2-carboxyl
The effect of the L-azetidine-2-carboxylic acid residue on protein conformation. I. Conformations of the residue and of dipeptides
✍ Adriana Zagari; George Némethy; Harold A. Scheraga 📂 Article 📅 1990 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 704 KB

## Abstract The L‐azetidine‐2‐carboxylic acid (Aze) residue can be incorporated into proteins in the place of L‐proline, of which it is the lower homologue. This substitution alters the properties of proteins, especially of collagen. Conformational constraints in N‐acetyl‐Aze‐N′‐methylamide and in

A new residue-nucleotide propensity pote
A new residue-nucleotide propensity potential with structural information considered for discriminating protein-RNA docking decoys
✍ Chun Hua Li; Li Bin Cao; Ji Guo Su; Yong Xiao Yang; Cun Xin Wang 📂 Article 📅 2011 🏛 John Wiley and Sons 🌐 English ⚖ 595 KB

## Abstract Understanding the key factors that influence the preferences of residue‐nucleotide interactions in specific protein‐RNA interactions has remained a research focus. We propose an effective approach to derive residue‐nucleotide propensity potentials through considering both the types of r