Prior segregation analysis and the power to detect linkage

✍ Scribed by Larry D. Atwood; Susan H. Slifer

• Publisher: John Wiley and Sons
• Year: 1997
• Tongue: English
• Weight: 52 KB
• Volume: 14
• Category: Article
• ISSN: 0741-0395
• DOI: 10.1002/(sici)1098-2272(1997)14:6<755::aid-gepi32>3.0.co;2-n

✦ Synopsis

Complex parametric segregation and linkage analysis was performed on the simulated quantitative trait Q1 for all 200 replicates of the nuclear families data set. The segregation analysis inferred a major gene in 46% of the replicates. Among all replicates, including those that rejected a major gene, the power to detect suggestive linkage to any of three loci affecting Q1 was 0.600 and the false positive rate was 0.002. Among the replicates where a major gene was found, the power to detect suggestive linkage was 0.652 and the false positive rate was also 0.002. Thus, for purposes of linkage to this complex trait, a prior segregation then linkage analysis approach located a gene in 30% of all replicates, whereas a linkage only approach located a gene in 60% of all replicates.