Bioinformatics. Methods and Protocols in
β Stephen Misener, Stephen A. Krawetz
π Library
π
2010
π Humana Press
π English
β¦ LIBER β¦
π
Plant Bioinformatics: Methods and Protocols (Methods in Molecular Biology, 406)
β Scribed by David Edwards (editor)
- Publisher
- Humana
- Year
- 2008
- Tongue
- English
- Leaves
- 551
- Category
- Library
β¬ Acquire This Volume
No coin nor oath required. For personal study only.
β¦ Synopsis
Bioinformatics is a new and rapidly evolving field of research that is being driven by the development and application of various βomics technologies. Plant Bioinformatics focuses on applied bioinformatics with specific applications to crops and model plants. Chapters in this new volume are aimed at researchers developing bioinformatics databases and tools, detailing commonly applied database formats and biology-focused scripting languages. These will provide both beginners and experienced bioinformatics researchers with the necessary skills to develop and apply bioinformatics tools for their specialist area of plant research. Each chapter includes practical examples and highlight common problems encountered in bioinformatics analysis. Protocols in this volume detail EMBL Nucleotide Sequence, TAIR database, VarvEST, MIPS, BGI-RIS V2, BarleyBase/PLEXdb, SAGE, KEGG, and more. Plant biologists who have an interest in or requirement for the accessing and manipulation of the huge amount of data being generated by high throughput technologies will find this new volume to be an immeasurable aid in their research.
β¦ Table of Contents
0edwardsFM.pdf
0edwards01.pdf
The EMBL Nucleotide Sequence and Genome Reviews Databases
Sterk et al.
0edwards02.pdf
Using GenBank
David Wheeler
0edwards03.pdf
A Collection of Plant-Specific Genomic Data and Resources at NCBI
Tatusova et al.
0edwards04.pdf
UniProtKB/Swiss-Prot
Emmanuel Boutet, Damien Lieberherr, Michael Tognolli, Michel Schneider, and Amos Bairoch
0edwards05.pdf
Plant Database Resources at The Institute for Genomic Research
Agnes P. Chan, Pablo D. Rabinowicz, John Quackenbush, C. Robin Buell, and Chris D. Town
0edwards06.pdf
MIPS Plant Genome Information Resources
Manuel Spannagl, Georg Haberer, Rebecca Ernst, Heiko Schoof, and Klaus F. X. Mayer
0edwards07.pdf
HarvEST
Close et al.
0edwards08.pdf
The TAIR Database
Rebecca L. Poole
0edwards09.pdf
AtEnsEMBL
James et al.
0edwards10.pdf
Accessing Integrated Brassica Genetic and Genomic Data Using the BASC Server
Love and Edwards
0edwards11.pdf
0edwards12.pdf
Legume Resources: MtDB and Medicago.Org
Retzel et al.
0edwards13.pdf
BGI-RIS V2
Ximiao He and Jun Wang
0edwards14.pdf
GrainGenes
Helen O'Sullivan
0edwards15.pdf
Gramene
Ware
0edwards16.pdf
MaizeGDB
Lawrence
0edwards17.pdf
BarleyBase/PLEXdb
Wise et al.
0edwards18.pdf
Reaping the Benefits of SAGE
Robinson et al.
0edwards19.pdf
Methods for Analysis of Gene Expression in Plants Using MPSS
Kan Nobuta, Kalyan Vemaraju, and Blake C. Meyers
0edwards20.pdf
Metabolomics Data Analysis, Visualization, and Integration
Sumner et al.
0edwards21.pdf
0edwards22.pdf
International Crop Information System for Germplasm Data Management
Arllet Portugal, Ranjan Balachandra, Thomas Metz, Richard Bruskiewich, and Graham McLaren
0edwards23.pdf
Automated Discovery of Single Nucleotide Polymorphism and Simple Sequence Repeat Molecular Genetic Markers
Batley et al.
0edwards24.pdf
Methods for Gene Ontology Annotation
Emily Dimmer, Tanya Z. Berardini, and Evelyn Camon
0edwards25.pdf
Gene Structure Annotation at PlantGDB
Volker Brendel
0edwards26.pdf
An Introduction to BioPerl
Jason E. Stajich
0edwardsindex.pdf
π SIMILAR VOLUMES
Bioinformatics. Methods and Protocols in
β Stephen Misener, Stephen A. Krawetz
π Library
π
2010
π Humana Press
π English
Hands-on users and experts survey the key biological software packages, offering useful tips and an overview of current developments. Among the sequence analysis systems reviewed are GCG, Omiga, MacVector, DNASTAR, PepToolβ’, GeneToolβ’, and the Staden Package. Molecular biology software includes Geno
Structural Bioinformatics: Methods and P
β ZoltΓ‘n GΓ‘spΓ‘ri (editor)
π Library
π
2020
π Springer
π English
<span>This volume looks at the latest techniques used to perform comparative structure analyses, and predict and evaluate protein-ligand interactions. The chapters in this book cover tools and servers such as LiteMol; Bio3D-Web; DALI; CATH; HoTMuSiC, a contact-base protein structure analysis tool kn
Plant Systems Biology: Methods and Proto
β MikaΓ«l Lucas (editor)
π Library
π
2021
π Humana
π English
This second edition volume expands on the previous edition with an update on the latest techniques used to study plant systems biology on three specific scales: the molecular level, the tissue level, and the whole plant. Chapters cover topics such as gene regulatory network inference and dynamic mod
Plant Synthetic Biology: Methods and Pro
β Matias D. Zurbriggen (editor)
π Library
π
2022
π Humana
π English
<p><span>This volume provides methods on different aspects and applications on plants, algae, photosynthetic bacteria, synthetic construct design, and multiplex cloning. Chapters cover multiple aspects of synthetic metabolic, photosynthetic systems, metabolic and signaling pathways, advanced enginee
Microbial Gene Essentiality: Protocols a
β Andrei L. Osterman, Svetlana Y. Gerdes
π Library
π
2008
π Humana Press
π English
This book contains a comprehensive collection of experimental and computational strategies and techniques for microbial genome-scale essentiality studies, developed and presented by the leading groups in the field. It contains detailed description of the procedures, discussion of potential difficult