Part B: Numerical Computer Methods

✍ Scribed by Michael L. Johnson, Ludwig Brand (Eds.)

• Publisher: Academic Press
• Year: 1994
• Tongue: English
• Leaves: 900
• Series: Methods in Enzymology 240
• Edition: 1
• Category: Library

✦ Synopsis

The contributions in this volume emphasize numerical analysis of experimental data and analytical biochemistry, with examples taken from biochemistry. They serve to inform biomedical researchers of the modern data analysis methods that have developed concmitantly with computer hardware

✦ Table of Contents

Content:
Contributors to volume 240
Pages ix-x

Preface
Pages xi-xiii
Michael L. Johnson, Ludwig Brand

Volumes in series
Pages xv-xxviii

[1] Use of least-squares techniques in biochemistry Original Research Article
Pages 1-22
Michael L. Johnson

[2] Parameter estimates from nonlinear models Original Research Article
Pages 23-36
Donald G. Watts

[3] Effects of heteroscedasticity and skewness on prediction in regression: Modeling growth of the human heart Original Research Article
Pages 37-51
Robert D. Abbott, Howard P. Gutgesell

[4] Artifacts of fourier series analysis Original Research Article
Pages 51-68
Michael L. Johnson, Michelle Lampl

[5] Quantification of evolution from order to randomness in practical time series analysis Original Research Article
Pages 68-89
Steven M. Pincus

[6] Sequential versus simultaneous analysis of data: Differences in reliability of derived quantitative conclusions Original Research Article
Pages 89-121
Martin Straume

[7] Model-independent quantification of measurement error: Empirical estimation of discrete variance function profiles based on standard curves Original Research Article
Pages 121-150
Martin Straume, Johannes D. Veldhuis, Michael L. Johnson

[8] Impact of variance function estimation in regression and calibration Original Research Article
Pages 150-170
Lie-Ju Hwang

[9] Application of the Kalman filter to computational problems in statistics Original Research Article
Pages 171-181
Emery N. Brown, Christopher H. Schmid

[10] Modeling chemical reactions: Jacobian paradigm and related issues Original Research Article
Pages 181-198
Richard I. Shrager

[11] The mathematics of biological oscillators Original Research Article
Pages 198-216
G. Bard Ermentrout

[12] Diffusion-modulated energy transfer and quenching: Analysis by numerical integration of diffusion equation in laplace space Original Research Article
Pages 216-262
JГіzef KuЕ›ba, Joseph R. Lakowicz

[13] Maximum entropy method of data analysis in time-resolved spectroscopy Original Research Article
Pages 262-311
Jean-Claude Brochon

[14] Analysis of kinetic data: Practical applications of computer simulation and fitting programs Original Research Article
Pages 311-322
Carl Frieden

[15] Determination of rate and equilibrium binding constants for macromolecular interactions by surface plasmon resonance Original Research Article
Pages 323-349
Daniel J. O'Shannessy, Michael Brigham-Burke, K. Karl Soneson, Preston Hensley, Ian Brooks

[16] Analysis of nonequilibrium dynamics of bound, free, and total plasma ligand concentrations over time following nonlinear secretory inputs: Kinetics of two or more hormones pulsed into compartments containing multiple variable-affinity binding proteins Original Research Article
Pages 349-377
Johannes D. Veldhuis, Lindsay M. Faunt, Michael L. Johnson

[17] Testing pulse detection algorithms with simulations of episodically pulsatile substrate, metabolite, or hormone release Original Research Article
Pages 377-415
Johannes D. Veldhuis, Michael L. Johnson

[18] Error analysis of macromolecular structures determined with nuclear magnetic resonance data Original Research Article
Pages 415-438
John W. Shriver, Stephen Edmondson

[19] Characterization of enzyme-complex formation by analysis of nuclear magnetic resonance line shapes Original Research Article
Pages 438-446
Carol Beth Post

[20] Computer simulations of nuclear overhauser effect spectra of complex oligosaccharides Original Research Article
Pages 446-459
C. Allen Bush

[21] Determining confidence intervals for parameters derived from analysis of equilibrium analytical ultracentrifugation data Original Research Article
Pages 459-478
Ian Brooks, Donald G. Watts, K. Karl Soneson, Preston Hensley

[22] Boundary analysis in sedimentation velocity experiments Original Research Article
Pages 478-501
Walter F. Stafford III

[23] Statistical thermodynamic analysis of differential scanning calorimetry data: Structural deconvolution of heat capacity function of proteins Original Research Article
Pages 502-530
Ernesto Freire

[24] Analysis of two-dimensional differential scanning calorimetry data: Elucidation of complex biomolecular energetics Original Research Article
Pages 530-568
Martin Straume

[25] Monte Carlo simulations of membranes: Phase transition of small unilamellar dipalmitoylphosphatidylcholine vesicles Original Research Article
Pages 569-593
IstvГЎn P. SugГЎr, Rodney L. Biltonen, Neil Mitchard

[26] Analysis of drug-DNA binding isotherms: A Monte Carlo approach Original Research Article
Pages 593-614
John J. Correia, Jonathan B. Chaires

[27] Analysis of multidimensional spectroscopic data to monitor unfolding of proteins Original Research Article
Pages 615-645
Glen D. Ramsay, Maurice R. Eftink

[28] Estimating binding constants for site-specific interactions between monovalent ions and proteins Original Research Article
Pages 645-667
Bertrand GarcГ­a-Moreno E

[29] Pattern recognition metric for comparison of protein structures based on amino acid sequences Original Research Article
Pages 667-723
John A. Schetz

[30] Fluorescence lifetime imaging microscopy: Homodyne technique using high-speed gated image intensifier Original Research Article
Pages 723-748
Henryk Szmacinski, Joseph R. Lakowicz, Michael L. Johnson

[31] Computations of time-dependent photon migration for biomedical optical imaging Original Research Article
Pages 748-781
Eva M. Sevick-Muraca

[32] Applying bifurcation theory to enzyme kinetics Original Research Article
Pages 781-816
Craig G. Hocker

Author index
Pages 817-840

Subject index
Pages 841-857