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Parallel processing of biological sequence comparison algorithms

โœ Scribed by Elizabeth W. Edmiston; Nolan G. Core; Joel H. Saltz; Roger M. Smith

Publisher
Springer
Year
1988
Tongue
English
Weight
776 KB
Volume
17
Category
Article
ISSN
1573-7640

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Parallel biological sequence comparison
Parallel biological sequence comparison using prefix computations
โœ Srinivas Aluru; Natsuhiko Futamura; Kishan Mehrotra ๐Ÿ“‚ Article ๐Ÿ“… 2003 ๐Ÿ› Elsevier Science ๐ŸŒ English โš– 217 KB

We present practical parallel algorithms using prefix computations for various problems that arise in pairwise comparison of biological sequences. We consider both constant and affine gap penalty functions, full-sequence and subsequence matching, and space-saving algorithms. Commonly used sequential