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On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths

✍ Scribed by Mueller-Dieckmann, Christoph ;Panjikar, Santosh ;Schmidt, Andrea ;Mueller, Simone ;Kuper, Jochen ;Geerlof, Arie ;Wilmanns, Matthias ;Singh, Rajesh K. ;Tucker, Paul A. ;Weiss, Manfred S.


Publisher
International Union of Crystallography
Year
2007
Tongue
English
Weight
1009 KB
Volume
63
Category
Article
ISSN
0907-4449

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✦ Synopsis


23 different crystal forms of 19 different biological macromolecules were examined with respect to their anomalously scattering substructures using diffraction data collected at a wavelength of 2.0 A ˚(6.2 keV). In more than 90% of the cases the substructure was found to contain more than just the protein S atoms. The data presented suggest that chloride, sulfate, phosphate or metal ions from the buffer or even from the purification protocol are frequently bound to the protein molecule and that these ions are often overlooked, especially if they are not bound at full occupancy. Thus, in order to fully describe the macromolecule under study, it seems desirable that any structure determination be complemented with a long-wavelength data set.


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Complete and highly redundant data sets were collected at different wavelengths between 0.80 and 2.65 A ˚for a total of ten different protein and DNA model systems. The magnitude of the anomalous signal-to-noise ratio as assessed by the quotient R anom /R r.i.m. was found to be influenced by the dat