𝔖 Bobbio Scriptorium
✦   LIBER   ✦

On the kinematics of protein folding

✍ Scribed by Sean Cahill; Michael Cahill; Kevin Cahill


Publisher
John Wiley and Sons
Year
2003
Tongue
English
Weight
583 KB
Volume
24
Category
Article
ISSN
0192-8651

No coin nor oath required. For personal study only.

✦ Synopsis


Abstract

We offer simple solutions to three kinematic problems that occur in the folding of proteins. We show how to construct suitably local elementary Monte Carlo moves, how to close a loop, and how to fold a loop without breaking the bond that closes it. Β© 2003 Wiley Periodicals, Inc. J Comput Chem 24: 1364–1370, 2003


πŸ“œ SIMILAR VOLUMES


Kinematics of fault-bend folding
✍ Arvid M. Johnson; Philip Berger πŸ“‚ Article πŸ“… 1989 πŸ› Elsevier Science 🌐 English βš– 977 KB

The concept of bed-duplication folding, a process of folding by stacking of duplicate beds above a thrust ramp, was introduced by John L. Rich in 1934, and such folding has been studied mechanically and geometrically during the last few years. This paper introduces two kinematical models to bridge

On the Conformational Stability of Folde
✍ P.K. Ponnuswamy; M.Michael Gromiha πŸ“‚ Article πŸ“… 1994 πŸ› Elsevier Science 🌐 English βš– 612 KB

The folded native state of a globular protein is noted to be marginally stabilized over the structureless unfolded state by various atomic/group interactions. Quantitative enumeration of these factors remains to be a difficult task to workers in the field. In this work we collect experimental inform

On a characterization of the folding of
✍ Milan RandiΔ‡; Goran Krilov πŸ“‚ Article πŸ“… 1999 πŸ› John Wiley and Sons 🌐 English βš– 173 KB πŸ‘ 1 views

We consider a characterization of the folding of 3-D model proteins. Using as the input the geometry of molecules, we first construct a distancerdistance matrix in which element i, j is given by the quotient of the Euclidean and the graph theoretical distance between the two vertices. The leading e

On the design and analysis of protein fo
✍ Dror Tobi; Gil Shafran; Nathan Linial; Ron Elber πŸ“‚ Article πŸ“… 2000 πŸ› John Wiley and Sons 🌐 English βš– 157 KB πŸ‘ 2 views

Pairwise interaction models to recognize native folds are designed and analyzed. Different sets of parameters are considered but the focus was on 20 Ψ‹ 20 contact matrices. Simultaneous solution of inequalities and minimization of the variance of the energy find matrices that recognize exactly the na

Protein folding mechanisms and the multi
✍ Nicholas D. Socci; JosΓ© Nelson Onuchic; Peter G. Wolynes πŸ“‚ Article πŸ“… 1998 πŸ› John Wiley and Sons 🌐 English βš– 475 KB πŸ‘ 2 views

An important idea that emerges from the energy landscape theory of protein folding is that subtle global features of the protein landscape can profoundly affect the apparent mechanism of folding. The relationship between various characteristic temperatures in the phase diagrams and landmarks in the

Thermodynamics of protein folding
✍ Peter L. Privalov πŸ“‚ Article πŸ“… 1997 πŸ› Elsevier Science 🌐 English βš– 338 KB

The most surprising feature of proteins, which distinguishes them from all other types of large polymeric molecules and provides them with a broad range of special properties, is their unique structural order. The position of each atom in these macromolecules is unique relative to its neighboring at