Omega amino acids in peptide design: incorporation into helices
β Scribed by Arindam Banerjee; Animesh Pramanik; Surajit Bhattacharjya; P. Balaram
- Book ID
- 102650677
- Publisher
- Wiley (John Wiley & Sons)
- Year
- 1998
- Tongue
- English
- Weight
- 601 KB
- Volume
- 39
- Category
- Article
- ISSN
- 0006-3525
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β¦ Synopsis
Incorporation of easily available achiral w-amino acid residues into an oligopeptide results in substitution of amide bonds by polymethylene units of an aliphatic chain, thereby providing a convenient strategy for constructing a peptidomimetic. The central Gly-Gly segment of the helical octapeptide Boc-Leu-Aib-Val-Gly-Gly-Leu-Aib-Val-OMe(1) has been replaced by d-aminovaleric acid (d-Ava) residue in the newly designed peptide . 'H-nmr results clearly suggest that in the apolar solvent CDC13, the 6-Ava residue is accommodated into a folded helical conformation, stabilized by successive hydrogen bonds involving the NH groups of Va1(3), 6-Ava(4), and Leu( 5). The 6-Ava residue must adopt a gauche-gauche-trans-gauche-gauche conformation along the central polymethylene unit of the aliphatic segment, a feature seen in an energy-minimized model conformation based on nmr parameters. The absence of hydrogen bonding functionalities, however, limits the elongation of the helix. In fact, in CDCl,, rhe folded conformation consists of an N-terminal helix spanning residues 1-4, followed by a Type II @-turn at residues 5 and 6, whereas in strongly solvating media like (CD,),SO, the unfolding of the N-terminal helix results in @-turn conformations at Leu([)-Aib(2). The Type II @-turn at the Leu(S)-Aib( 6) segment remains intact even in (CDJ2S0. CD comparisons ofpeptides 1 and 2 reveal a "nonhe1ical"spectrum for 2 in 2,2,2trijluoroethanol.
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## Abstract For Abstract see ChemInform Abstract in Full Text.
3-[p-[3-(Trifluoromethyl)-3H-diazirin-3-yl]phenyl]alanine has been prepared in 10 steps from p-bromobenzyl alcohol. The alcohol was converted to 3-(alpha-iodo-p-tolyl)-3-(trifluoromethyl)-3H-diazirine, which was used to alkylate N-(diphenylmethylene)glycine ethyl ester. After deprotection the amino