Nuclear Magnetic Resonance and Nucleic Acids

✍ Scribed by Thomas L. James (Eds.)

• Publisher: Academic Press
• Year: 1995
• Tongue: English
• Leaves: 667
• Series: Methods in Enzymology 261
• Edition: 1
• Category: Library

✦ Synopsis

The critically acclaimed laboratory standard for forty years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Since 1955, each volume has been eagerlyawaited, frequently consulted, and praised by researchers and reviewers alike. More than 250 volumes have been published (all of them still in print) and much of the material is relevant even today--truly an essential publication for researchers in all fields of life sciences

✦ Table of Contents

Content:
Contributors to volume 261
Pages ix-xi

Preface
Page xiii
Thomas L. James

Volumes in series
Pages xv-xxix

[1] How to generate accurate solution structures of double-helical nucleic acid fragments using nuclear magnetic resonance and restrained molecular dynamics Original Research Article
Pages 3-44
Uli Schmitz, Thomas L. James

[2] Comparison of X-ray and NMR-determined nucleic acid structures Original Research Article
Pages 45-73
Bruce A. Luxon, David G. Gorenstein

[3] Distance geometry in NMR determination of solution conformation of nucleic acids: Application of d-ACCGTTAACGGT Original Research Article
Pages 73-89
P.K. Radha, R. Nibedita, R. Ajay Kumar, R.V. Hosur

[4] Statistical analysis of DNA duplex structural features Original Research Article
Pages 90-120
Nikolai B. Ulyanov, Thomas L. James

[5] Structure determination and analysis of local bending in an A-tract DNA duplex: Comparison of results from crystallography, nuclear magnetic resonance, and molecular dynamics simulation on d(CGCAAAAATGCG) Original Research Article
Pages 121-128,IN1-IN2,129-144
Matthew A. Young, Jayasharee Srinivasan, Igor Goljer, Surat Kumar, David L. Beveridge, Philip H. Bolton

[6] DNA mismatches and modified bases Original Research Article
Pages 145-163
G.Victor Fazakerley, Yves Boulard

[7] NMR studies of complex DNA structures: The holliday junction intermediate in genetic recombination Original Research Article
Pages 163-182
Göran Carlström, Shiow-Meei Chen, Siobhan Muck, Walter J. Chazin

[8] Structural studies of DNA three-way junctions Original Research Article
Pages 183-207
Neocles B. Leontis, Martial E. Piotto, Michael T. Hills, Arun Malhotra, Igor V. Ouporov, Jean M. Nussbaum, David G. Gorenstein

[9] Parallel-stranded duplex DNA: An NMR perspective Original Research Article
Pages 207-225
M.W. Germann, N. Zhou, J.H. van de Sande, H.J. Vogel

[10]¹H NMR spectroscopy of DNA triplexes and quadruplexes Original Research Article
Pages 225-255
Juli Feigon, Karl M. Koshlap, Flint W. Smith

[11] Solid-state NMR of DNA Original Research Article
Pages 256-270
Chi-Long Juang, Pei Tang, Gerard S. Harbison

[12] Systems for the NMR study of modified nucleoside-dependent, metal-ion induced conformational changes in nucleic acids Original Research Article
Pages 270-299
Paul F. Agris, Stephen C. Brown

[13] Preparation of isotopically enriched RNAs for heteronuclear NMR Original Research Article
Pages 300-322
Robert T. Batey, John L. Battiste, James R. Williamson

[14] Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots Original Research Article
Pages 323-350
Joseph D. Puglisi, Jacqueline R. Wyatt

[15] Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNA Original Research Article
Pages 350-380
Arthur Pardi

[16] Studies of base pair kinetics by NMR measurement of proton exchange Original Research Article
Pages 383-413
Maurice GuГ©ron, Jean-Louis Leroy

[17] Determination of fast dynamics of nucleic acids by NMR Original Research Article
Pages 413-435
Andrew N. Lane

[18] Isotope labeling for ¹³C relaxation measurements on RNA Original Research Article
Pages 436-450
Garry C. King, J. Wade Harper, Zhijian Xi

[19] Site-specific dynamics in DNA: Theory and experiment Original Research Article
Pages 451-509
B.H. Robinson, G.P. Drobny

[20] NMR and nucleic acid-protein interactions: The Lac repressor-operator system Original Research Article
Pages 513-524
R. Kaptein, R. Boelens, V.P. Chuprina, J.A.C. Rullmann, M. Slijper

[21] Induced structural changes in protein-DNA complexes Original Research Article
Pages 524-541
Yoshimasa Kyogoku, Chojiro Kojima, Sang Jeon Lee, Hidehito Tochio, Nobuaki Suzuki, Hiroshi Matsuo, Masahiro Shirakawa

[22] Uses of ¹³C- and ¹⁵N-labeled RNA in NMR of RNA-protein complexes Original Research Article
Pages 542-559
Kathleen B. Hall

[23] Studies of nucleic acids and their protein interactions by ¹⁹F NMR Original Research Article
Pages 560-575
Fraydoon Rastinejad, Caryn Evilia, Ponzy Lu

[24] NMR studies of drug-DNA complexes Original Research Article
Pages 575-604
Max A. Keniry, Richard H. Shafer

Author index
Pages 605-628

Subject index
Pages 629-644