We refined the united atom field for the simulations of phospholipid membranes. To validate this potential we performed 1000-ps Ž . constant pressure simulation of a dipalmitoylphosphatidicholine DPPC bilayer ˚2 Ž . at T s 50Њ C. The average area per head group 61.6 " 0.6 A obtained in our ˚2 Ž . si
New all-atom force field for molecular dynamics simulation of an AlPO4-34 molecular sieve
✍ Scribed by Matej Praprotnik; Stanko Hočevar; Milan Hodošček; Matej Penca; Dušanka Janežič
- Publisher
- John Wiley and Sons
- Year
- 2007
- Tongue
- English
- Weight
- 294 KB
- Volume
- 29
- Category
- Article
- ISSN
- 0192-8651
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✦ Synopsis
Abstract
A force field of the triclinic framework of AlPO~4~‐34, important in methanol–hydrocarbon conversion reactions, was developed using an empirical potential function. Molecular dynamics simulation of an AlPO~4~‐34 triclinic framework segment of 1216 atoms, containing the template molecules isopropylamine and water, was performed with explicit consideration of atomic charges. The average RMS difference between instantaneous positions of the framework atoms during 1 ns simulation and their positions in the structure determined from single crystal X‐ray diffraction was calculated, and the average structure of the flexible framework was determined. The computed Debye‐Waller factors and simulated FTIR spectra are in good agreement with the experimental data. The new force field permits detailed molecular dynamics simulations of flexible, charged aluminophosphate molecular sieves which should lead to a better understanding of the catalytic processes and the crucial role played by templating molecules. © 2007 Wiley Periodicals, Inc. J Comput Chem, 2008
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